Variant report
| Variant | rs12585937 |
|---|---|
| Chromosome Location | chr13:50467344-50467345 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-TRIM13-8 | chr13:50464545-50467516 | NR_003268 |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| RNY4P30 | TF binding region |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs12429041 | 0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12429047 | 0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs12430021 | 0.93[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs12430731 | 0.80[ASN][1000 genomes] |
| rs12584761 | 0.85[EUR][1000 genomes] |
| rs1609571 | 0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs17073758 | 0.85[EUR][1000 genomes] |
| rs2407879 | 0.94[ASN][1000 genomes] |
| rs2897794 | 0.85[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs4142286 | 0.83[EUR][1000 genomes] |
| rs4942896 | 0.93[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs4942898 | 0.91[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs4942903 | 0.85[EUR][1000 genomes] |
| rs7983585 | 0.81[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs9562938 | 0.83[ASN][1000 genomes] |
| rs9562939 | 0.82[ASN][1000 genomes] |
| rs9562940 | 0.89[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs9562941 | 0.93[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs9562944 | 0.91[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs9562951 | 0.89[EUR][1000 genomes] |
| rs9568348 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs9568351 | 0.89[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs9568353 | 0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs9568359 | 0.91[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs9568361 | 0.93[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs9568365 | 0.89[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs9568371 | 0.85[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs9568379 | 0.85[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3436655 | chr13:50462077-50472044 | Enhancers Weak transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
