Variant report

Variant	rs4942896
Chromosome Location	chr13:50483528-50483529
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12429041	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12429047	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12430021	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12430731	0.82[ASN][1000 genomes]
rs12584761	0.91[EUR][1000 genomes]
rs12585937	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1609571	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17073758	0.91[EUR][1000 genomes]
rs2407879	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2897794	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4142286	0.89[EUR][1000 genomes]
rs4942898	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4942903	0.91[EUR][1000 genomes]
rs7983585	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9562938	0.83[ASN][1000 genomes]
rs9562939	0.81[ASN][1000 genomes]
rs9562940	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9562941	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9562944	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9562951	0.95[EUR][1000 genomes]
rs9568348	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9568351	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9568353	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9568359	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9568361	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9568365	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9568371	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9568379	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1851738	chr13:50474326-50507944	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50468600-50486000	Weak transcription	Liver	Liver
2	chr13:50476400-50497400	Weak transcription	Pancreas	Pancrea
3	chr13:50477800-50499600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr13:50478000-50487200	Weak transcription	Ovary	ovary
5	chr13:50478000-50495200	Weak transcription	Brain Hippocampus Middle	brain
6	chr13:50478600-50491400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr13:50479200-50489600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr13:50479400-50490600	Weak transcription	Esophagus	oesophagus
9	chr13:50479600-50508600	Weak transcription	K562	blood
10	chr13:50479800-50500000	Weak transcription	Colon Smooth Muscle	Colon
11	chr13:50480800-50508800	Weak transcription	Fetal Brain Male	brain
12	chr13:50481400-50486200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr13:50481400-50489600	Weak transcription	Fetal Intestine Large	intestine
14	chr13:50481800-50509600	Weak transcription	Right Ventricle	heart
15	chr13:50482000-50488000	Weak transcription	A549	lung
16	chr13:50482200-50486000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr13:50482200-50486000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr13:50482200-50486200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr13:50482200-50486200	Weak transcription	Osteobl	bone
20	chr13:50482200-50488000	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr13:50482200-50490400	Weak transcription	Fetal Muscle Leg	muscle
22	chr13:50482400-50486000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr13:50482400-50486000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr13:50482400-50488000	Weak transcription	HMEC	breast
25	chr13:50482400-50489600	Weak transcription	Primary hematopoietic stem cells	blood
26	chr13:50482600-50486000	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr13:50482600-50488000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr13:50482600-50490200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr13:50482600-50490400	Weak transcription	NHLF	lung
30	chr13:50482600-50509600	Weak transcription	Primary B cells from cord blood	blood
31	chr13:50482800-50485800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr13:50482800-50488000	Weak transcription	Placenta	Placenta
33	chr13:50483000-50492200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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