Variant report

Variant	rs9568353
Chromosome Location	chr13:50481713-50481714
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11617754	0.82[CHB][hapmap]
rs12429041	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12429047	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12430021	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12430731	0.84[ASN][1000 genomes]
rs12584761	0.89[EUR][1000 genomes]
rs12585937	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1609571	0.85[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17073758	0.93[EUR][1000 genomes]
rs2407879	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2897794	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4142286	0.91[EUR][1000 genomes]
rs4942896	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4942898	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4942903	0.89[EUR][1000 genomes]
rs790943	0.82[CHB][hapmap]
rs7983585	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7986337	0.87[CHB][hapmap]
rs9562938	0.86[ASN][1000 genomes]
rs9562939	0.84[ASN][1000 genomes]
rs9562940	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9562941	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9562944	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9562951	0.93[EUR][1000 genomes]
rs9568348	0.82[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9568351	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9568357	0.82[CHB][hapmap]
rs9568359	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9568361	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9568365	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9568366	0.81[CHB][hapmap]
rs9568371	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9568379	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1851738	chr13:50474326-50507944	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50468600-50486000	Weak transcription	Liver	Liver
2	chr13:50476400-50497400	Weak transcription	Pancreas	Pancrea
3	chr13:50477800-50499600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr13:50478000-50487200	Weak transcription	Ovary	ovary
5	chr13:50478000-50495200	Weak transcription	Brain Hippocampus Middle	brain
6	chr13:50478600-50491400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr13:50479200-50489600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr13:50479400-50482200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr13:50479400-50490600	Weak transcription	Esophagus	oesophagus
10	chr13:50479600-50508600	Weak transcription	K562	blood
11	chr13:50479800-50500000	Weak transcription	Colon Smooth Muscle	Colon
12	chr13:50480800-50508800	Weak transcription	Fetal Brain Male	brain
13	chr13:50481200-50482800	Enhancers	Placenta	Placenta
14	chr13:50481400-50482200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr13:50481400-50486200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr13:50481400-50489600	Weak transcription	Fetal Intestine Large	intestine

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