Variant report

Variant	rs9568348
Chromosome Location	chr13:50468722-50468723
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr13:50468706-50468851	HepG2	liver:	n/a	n/a
2	MAFK	chr13:50468703-50468808	HepG2	liver:	n/a	n/a
3	MAX	chr13:50468636-50468898	NB4	blood:	n/a	chr13:50468735-50468745

Variant related genes	Relation type
RNY4P30	TF binding region

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11617754	0.81[CHB][hapmap]
rs12429041	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12429047	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12430021	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12584761	0.85[EUR][1000 genomes]
rs12585937	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1609571	0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17073758	0.85[EUR][1000 genomes]
rs2407879	0.94[ASN][1000 genomes]
rs2897794	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4142286	0.83[EUR][1000 genomes]
rs4942896	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4942898	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4942903	0.85[EUR][1000 genomes]
rs790943	0.82[CHB][hapmap]
rs7983585	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7986337	0.86[CHB][hapmap]
rs9562938	0.84[ASN][1000 genomes]
rs9562939	0.82[ASN][1000 genomes]
rs9562940	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9562941	0.82[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9562944	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9562951	0.89[EUR][1000 genomes]
rs9568351	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9568353	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9568357	0.81[CHB][hapmap]
rs9568359	0.82[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9568361	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9568365	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9568366	0.80[CHB][hapmap]
rs9568371	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9568379	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3436655	chr13:50462077-50472044	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50468200-50469600	Weak transcription	Placenta	Placenta
2	chr13:50468400-50468800	Weak transcription	HepG2	liver
3	chr13:50468600-50486000	Weak transcription	Liver	Liver

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