Variant report

Variant	rs12429047
Chromosome Location	chr13:50479534-50479535
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11617754	0.82[CHB][hapmap]
rs12429041	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12430021	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12430731	0.85[ASN][1000 genomes]
rs12584761	0.91[EUR][1000 genomes]
rs12585937	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1609571	0.95[CHB][hapmap];0.90[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17073758	0.91[EUR][1000 genomes]
rs2407879	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2897794	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4142286	0.89[EUR][1000 genomes]
rs4942896	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4942898	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4942903	0.91[EUR][1000 genomes]
rs790943	0.83[CHB][hapmap]
rs7983585	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7986337	0.87[CHB][hapmap]
rs9562938	0.85[ASN][1000 genomes]
rs9562939	0.84[ASN][1000 genomes]
rs9562940	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9562941	0.85[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9562944	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9562951	0.95[EUR][1000 genomes]
rs9568348	1.00[CHB][hapmap];0.86[JPT][hapmap];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9568351	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9568353	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9568357	0.82[CHB][hapmap]
rs9568359	0.85[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9568361	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9568365	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9568366	0.81[CHB][hapmap]
rs9568371	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9568379	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1851738	chr13:50474326-50507944	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50468600-50486000	Weak transcription	Liver	Liver
2	chr13:50476400-50497400	Weak transcription	Pancreas	Pancrea
3	chr13:50477800-50499600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr13:50478000-50487200	Weak transcription	Ovary	ovary
5	chr13:50478000-50495200	Weak transcription	Brain Hippocampus Middle	brain
6	chr13:50478600-50491400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr13:50479200-50479600	Enhancers	K562	blood
8	chr13:50479200-50489600	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr13:50479400-50482200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr13:50479400-50490600	Weak transcription	Esophagus	oesophagus

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