Variant report

Variant	rs9284802
Chromosome Location	chr3:85095766-85095767
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:85091072..85092895-chr3:85093228..85096203,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10433523	0.82[EUR][1000 genomes]
rs11127873	0.81[EUR][1000 genomes]
rs11127876	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11713170	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13061527	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13064817	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13078494	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13095644	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13097560	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13101042	0.83[EUR][1000 genomes]
rs1545926	0.81[ASN][1000 genomes]
rs2171140	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2200464	0.80[EUR][1000 genomes]
rs2220244	0.81[ASN][1000 genomes]
rs34201102	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4410457	0.81[EUR][1000 genomes]
rs4516626	0.84[AMR][1000 genomes]
rs4635723	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6549011	0.81[EUR][1000 genomes]
rs6549012	0.81[EUR][1000 genomes]
rs66500121	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6765011	0.81[EUR][1000 genomes]
rs6775752	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6790864	0.81[EUR][1000 genomes]
rs6791035	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6796393	0.81[EUR][1000 genomes]
rs6808586	0.81[AMR][1000 genomes]
rs7623714	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7628129	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7630382	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7636138	0.80[EUR][1000 genomes]
rs9309969	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9814600	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9814835	0.81[EUR][1000 genomes]
rs9819278	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9820587	0.80[EUR][1000 genomes]
rs9835904	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9838091	0.84[AMR][1000 genomes]
rs9839194	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9846802	0.84[AMR][1000 genomes]
rs9875381	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9878472	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9883252	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002058	chr3:84757044-85389876	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv3419993	chr3:85030343-85663403	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv492289	chr3:85066623-85319147	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2753915	chr3:85071410-85624810	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85091600-85095800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr3:85092200-85099400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr3:85095400-85096200	Enhancers	Fetal Brain Male	brain

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