Variant report

Variant	rs6775752
Chromosome Location	chr3:85130981-85130982
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10433523	1.00[CHB][hapmap];0.83[EUR][1000 genomes]
rs11127873	0.82[EUR][1000 genomes]
rs11127876	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11127877	1.00[CHB][hapmap]
rs11127880	0.85[CHB][hapmap]
rs11713170	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13061527	0.96[CEU][hapmap];0.85[CHB][hapmap];0.90[CHD][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13064817	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13078494	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13095644	0.84[CEU][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13097560	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13101042	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1376938	0.82[CHB][hapmap]
rs1545926	0.85[CHB][hapmap];0.82[ASN][1000 genomes]
rs2171140	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2200464	0.81[EUR][1000 genomes]
rs2220244	0.85[CHB][hapmap];0.81[CHD][hapmap];0.85[MEX][hapmap];0.82[ASN][1000 genomes]
rs2326225	0.81[MEX][hapmap]
rs34201102	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4410457	0.82[EUR][1000 genomes]
rs4516626	0.85[CEU][hapmap];1.00[MEX][hapmap];0.85[AMR][1000 genomes]
rs4635723	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6549011	0.82[EUR][1000 genomes]
rs6549012	1.00[CHB][hapmap];0.82[EUR][1000 genomes]
rs6549016	0.81[ASN][1000 genomes]
rs66500121	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6765011	0.80[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes]
rs6790864	0.85[GIH][hapmap];0.86[MEX][hapmap];0.84[TSI][hapmap];0.82[EUR][1000 genomes]
rs6791035	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6796256	0.85[CHB][hapmap]
rs6796393	1.00[CHB][hapmap];0.85[GIH][hapmap];0.82[TSI][hapmap];0.82[EUR][1000 genomes]
rs6798922	0.82[CHB][hapmap];0.81[EUR][1000 genomes]
rs6808586	0.85[CEU][hapmap];1.00[MEX][hapmap];0.82[AMR][1000 genomes]
rs7623714	0.86[ASW][hapmap];0.96[CEU][hapmap];0.85[CHB][hapmap];0.90[CHD][hapmap];0.91[GIH][hapmap];0.88[LWK][hapmap];0.89[MKK][hapmap];0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7628129	0.85[CEU][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7630382	0.85[CEU][hapmap];1.00[MEX][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7632628	0.85[CHB][hapmap]
rs7636138	0.85[CHB][hapmap];0.85[GIH][hapmap];0.82[TSI][hapmap];0.81[EUR][1000 genomes]
rs9284802	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9309969	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9309970	0.85[CHB][hapmap]
rs9814600	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9814835	1.00[CHB][hapmap];0.85[GIH][hapmap];0.86[MEX][hapmap];0.84[TSI][hapmap];0.82[EUR][1000 genomes]
rs9818067	0.81[CHD][hapmap]
rs9819278	0.96[CEU][hapmap];0.85[CHB][hapmap];0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9820587	0.85[CHB][hapmap];0.85[GIH][hapmap];0.82[TSI][hapmap];0.81[EUR][1000 genomes]
rs9835904	0.85[CEU][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9838091	0.85[CEU][hapmap];0.85[AMR][1000 genomes]
rs9839194	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9846802	0.85[AMR][1000 genomes]
rs9875381	0.96[CEU][hapmap];0.85[CHB][hapmap];0.90[CHD][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9878472	0.85[CEU][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9883252	1.00[CEU][hapmap];0.85[CHB][hapmap];0.80[JPT][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002058	chr3:84757044-85389876	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv3419993	chr3:85030343-85663403	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv492289	chr3:85066623-85319147	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2753915	chr3:85071410-85624810	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv877093	chr3:85101501-85194054	Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv590897	chr3:85122624-85187085	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv877094	chr3:85124697-85253981	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85130000-85132000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr3:85130200-85131400	Enhancers	Muscle Satellite Cultured Cells	--
3	chr3:85130400-85131000	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr3:85130400-85131000	Enhancers	H1 Cell Line	embryonic stem cell
5	chr3:85130400-85131000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr3:85130400-85131000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr3:85130400-85131200	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr3:85130400-85131600	Enhancers	Brain Anterior Caudate	brain
9	chr3:85130400-85132000	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr3:85130400-85132000	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr3:85130400-85132000	Enhancers	Brain Angular Gyrus	brain
12	chr3:85130400-85132200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr3:85130400-85132200	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr3:85130400-85133800	Enhancers	Brain Substantia Nigra	brain
15	chr3:85130600-85131200	Enhancers	Fetal Brain Male	brain
16	chr3:85130600-85131400	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr3:85130600-85131400	Enhancers	Colon Smooth Muscle	Colon
18	chr3:85130600-85131800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr3:85130600-85131800	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr3:85130600-85132000	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr3:85130600-85132000	Enhancers	Brain Hippocampus Middle	brain
22	chr3:85130600-85132200	Enhancers	Fetal Lung	lung
23	chr3:85130800-85131400	Weak transcription	Brain Cingulate Gyrus	brain
24	chr3:85130800-85132000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr3:85130800-85132000	Enhancers	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links