Variant report

Variant	rs11127880
Chromosome Location	chr3:85195315-85195316
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 110 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs1013839	0.80[CEU][hapmap]
rs10433523	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs11127873	0.83[ASN][1000 genomes]
rs11127876	0.86[CHB][hapmap]
rs11127877	0.86[CHB][hapmap];0.83[ASN][1000 genomes]
rs11127882	0.85[CHB][hapmap];0.87[YRI][hapmap]
rs11127883	0.82[CHB][hapmap]
rs11127884	0.82[CHB][hapmap]
rs12053927	0.85[CHB][hapmap]
rs12486784	0.82[CHB][hapmap]
rs12486846	0.85[CHB][hapmap]
rs12487792	0.83[YRI][hapmap]
rs12488308	0.82[CHB][hapmap]
rs13059053	0.86[EUR][1000 genomes]
rs13059287	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13061527	1.00[CHB][hapmap]
rs13097560	0.85[CHB][hapmap]
rs1349602	0.85[CHB][hapmap]
rs1376934	0.84[CEU][hapmap]
rs1376936	0.85[CHB][hapmap];0.83[YRI][hapmap]
rs1376938	0.85[CHB][hapmap]
rs1452117	0.84[CEU][hapmap];0.88[EUR][1000 genomes]
rs1452120	0.81[CEU][hapmap]
rs1452121	0.84[CEU][hapmap]
rs1452122	0.82[CHB][hapmap]
rs1452123	0.82[CHB][hapmap]
rs1452125	0.90[EUR][1000 genomes]
rs1452126	0.85[CHB][hapmap]
rs1452127	0.82[CHB][hapmap]
rs1545926	0.80[CEU][hapmap];1.00[CHB][hapmap];0.80[EUR][1000 genomes]
rs1839939	0.83[EUR][1000 genomes]
rs1968691	0.85[CHB][hapmap]
rs2034619	0.82[CHB][hapmap]
rs2123162	0.84[CEU][hapmap]
rs2167604	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs2167606	0.82[CHB][hapmap]
rs2171141	0.92[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2200464	0.97[ASN][1000 genomes]
rs2220244	1.00[CHB][hapmap];0.84[EUR][1000 genomes]
rs2290339	0.85[CHB][hapmap]
rs4410457	0.83[ASN][1000 genomes]
rs4856268	0.88[EUR][1000 genomes]
rs62250629	0.96[ASN][1000 genomes]
rs6549011	0.82[ASN][1000 genomes]
rs6549012	0.86[CHB][hapmap];0.82[ASN][1000 genomes]
rs6765011	0.86[CHB][hapmap];0.82[ASN][1000 genomes]
rs6775464	0.96[ASN][1000 genomes]
rs6775752	0.85[CHB][hapmap]
rs6775792	0.85[CHB][hapmap]
rs6780644	0.82[CHB][hapmap]
rs6788656	0.96[ASN][1000 genomes]
rs6789415	0.85[CHB][hapmap]
rs6790864	0.83[ASN][1000 genomes]
rs6794614	0.82[CEU][hapmap];0.83[EUR][1000 genomes]
rs6796256	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.96[ASN][1000 genomes]
rs6796393	0.85[CHB][hapmap];0.83[ASN][1000 genomes]
rs6798922	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6799730	0.85[CHB][hapmap]
rs7623714	1.00[CHB][hapmap]
rs7625890	0.81[EUR][1000 genomes]
rs7630177	0.85[CHB][hapmap]
rs7632628	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7632909	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7635613	0.82[CHB][hapmap]
rs7635695	0.83[EUR][1000 genomes]
rs7636138	1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs7645049	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7646739	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs818216	0.82[CHB][hapmap]
rs818217	0.82[CHB][hapmap]
rs818218	0.85[CHB][hapmap]
rs818222	0.82[CHB][hapmap]
rs818226	0.85[CHB][hapmap]
rs9309970	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs959236	0.86[EUR][1000 genomes]
rs9681960	0.85[CHB][hapmap]
rs9682566	0.84[CEU][hapmap]
rs9810830	0.82[CHB][hapmap]
rs9813787	0.85[CHB][hapmap]
rs9814835	0.85[CHB][hapmap];0.82[ASN][1000 genomes]
rs9818067	0.82[CHB][hapmap]
rs9819278	1.00[CHB][hapmap]
rs9820587	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs9832814	0.81[ASN][1000 genomes]
rs9857682	0.91[EUR][1000 genomes]
rs986132	0.84[CEU][hapmap]
rs9866167	0.82[CHB][hapmap]
rs9875381	1.00[CHB][hapmap]
rs9882148	0.82[CHB][hapmap]
rs9882296	0.85[CHB][hapmap]
rs9883252	1.00[CHB][hapmap]
rs994237	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002058	chr3:84757044-85389876	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv3419993	chr3:85030343-85663403	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv492289	chr3:85066623-85319147	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2753915	chr3:85071410-85624810	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv877094	chr3:85124697-85253981	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv590898	chr3:85158733-85243777	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv877095	chr3:85163167-85290434	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv877096	chr3:85163167-85366517	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv460747	chr3:85163167-85391672	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv590899	chr3:85163167-85391672	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv1001124	chr3:85167047-85309046	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv590900	chr3:85177049-85265011	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv877097	chr3:85177173-85290434	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv877098	chr3:85177173-85361645	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv460748	chr3:85194054-85302473	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv460749	chr3:85194054-85302473	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv590901	chr3:85194054-85302473	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv470716	chr3:85194054-85316648	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85169200-85198600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr3:85191400-85197200	Weak transcription	Brain Anterior Caudate	brain
3	chr3:85193400-85197200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr3:85193400-85197200	Weak transcription	Brain Substantia Nigra	brain

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