Variant report

Variant	rs6549011
Chromosome Location	chr3:85096492-85096493
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10433523	1.00[CEU][hapmap];0.87[JPT][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11127873	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11127876	0.82[EUR][1000 genomes]
rs11127877	1.00[CEU][hapmap];0.87[JPT][hapmap];0.83[YRI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11127880	0.82[ASN][1000 genomes]
rs13059287	0.82[ASN][1000 genomes]
rs13072305	0.85[EUR][1000 genomes]
rs13078494	0.80[EUR][1000 genomes]
rs13097560	0.82[EUR][1000 genomes]
rs13101042	0.82[EUR][1000 genomes]
rs1994315	0.81[EUR][1000 genomes]
rs2062431	0.85[EUR][1000 genomes]
rs2087011	0.82[EUR][1000 genomes]
rs2171140	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2171141	0.84[ASN][1000 genomes]
rs2200461	0.85[EUR][1000 genomes]
rs2200464	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2220243	0.85[EUR][1000 genomes]
rs2326126	0.85[EUR][1000 genomes]
rs2326128	0.84[EUR][1000 genomes]
rs34201102	0.81[EUR][1000 genomes]
rs4410457	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4856559	0.81[EUR][1000 genomes]
rs4856560	0.85[EUR][1000 genomes]
rs62250629	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6549009	0.80[EUR][1000 genomes]
rs6549012	1.00[CEU][hapmap];0.86[JPT][hapmap];0.90[YRI][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66500121	0.81[EUR][1000 genomes]
rs6765011	1.00[CEU][hapmap];0.87[JPT][hapmap];0.90[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6768559	0.85[EUR][1000 genomes]
rs6775464	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6775752	0.82[EUR][1000 genomes]
rs6788656	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6790864	0.91[CEU][hapmap];0.82[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6791035	0.82[EUR][1000 genomes]
rs6796256	0.96[CEU][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6796393	1.00[CEU][hapmap];0.86[JPT][hapmap];0.82[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6798922	0.96[CEU][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6801271	0.82[EUR][1000 genomes]
rs7632628	0.84[ASN][1000 genomes]
rs7632909	0.84[ASN][1000 genomes]
rs7636138	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7645049	0.84[ASN][1000 genomes]
rs7645952	0.85[EUR][1000 genomes]
rs7646739	0.82[ASN][1000 genomes]
rs7647649	0.82[EUR][1000 genomes]
rs9284802	0.81[EUR][1000 genomes]
rs9309969	0.81[EUR][1000 genomes]
rs9309970	0.96[CEU][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9814390	0.85[EUR][1000 genomes]
rs9814835	1.00[CEU][hapmap];0.86[JPT][hapmap];0.89[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9820587	1.00[CEU][hapmap];0.86[JPT][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9839194	0.82[EUR][1000 genomes]
rs9855054	0.85[EUR][1000 genomes]
rs9869902	0.85[EUR][1000 genomes]
rs9883252	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002058	chr3:84757044-85389876	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv3419993	chr3:85030343-85663403	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv492289	chr3:85066623-85319147	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2753915	chr3:85071410-85624810	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85092200-85099400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr3:85096200-85103200	Weak transcription	Fetal Brain Male	brain

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