Variant report

Variant	rs9300371
Chromosome Location	chr13:97552375-97552376
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:97550180..97553018-chr13:97555719..97557599,2	K562	blood:
2	chr13:97550582..97553247-chr13:97555120..97556675,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1999833	1.00[EUR][1000 genomes]
rs7317397	1.00[EUR][1000 genomes]
rs7325474	1.00[EUR][1000 genomes]
rs73549299	1.00[EUR][1000 genomes]
rs9300381	1.00[EUR][1000 genomes]
rs9582078	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584460	1.00[EUR][1000 genomes]
rs9584488	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530742	chr13:96917313-97627023	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
2	nsv562792	chr13:96976345-97563413	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97551200-97552800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr13:97551200-97552800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr13:97551200-97553000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr13:97551400-97553000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr13:97551400-97553200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr13:97551400-97553200	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr13:97551400-97553200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr13:97551600-97553000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr13:97551600-97553200	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr13:97551600-97553200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr13:97551600-97553200	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr13:97551600-97553600	Enhancers	Brain Cingulate Gyrus	brain
13	chr13:97551600-97553600	Enhancers	Brain Substantia Nigra	brain
14	chr13:97551600-97556000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr13:97551800-97552800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr13:97551800-97552800	Weak transcription	Brain Anterior Caudate	brain
17	chr13:97551800-97552800	Weak transcription	Brain Hippocampus Middle	brain
18	chr13:97551800-97552800	Weak transcription	Fetal Brain Male	brain
19	chr13:97551800-97553000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr13:97551800-97553000	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr13:97551800-97553000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr13:97551800-97553200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr13:97552000-97553200	Enhancers	HUVEC	blood vessel
24	chr13:97552200-97553400	Enhancers	HUES48 Cell Line	embryonic stem cell

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