Variant report

Variant	rs73549299
Chromosome Location	chr13:97598575-97598576
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1999833	1.00[EUR][1000 genomes]
rs7317397	1.00[EUR][1000 genomes]
rs7325474	1.00[EUR][1000 genomes]
rs9300371	1.00[EUR][1000 genomes]
rs9300381	1.00[EUR][1000 genomes]
rs9300388	1.00[EUR][1000 genomes]
rs9300390	1.00[EUR][1000 genomes]
rs9300391	1.00[EUR][1000 genomes]
rs9582078	1.00[EUR][1000 genomes]
rs9582111	1.00[EUR][1000 genomes]
rs9582112	1.00[EUR][1000 genomes]
rs9584460	1.00[EUR][1000 genomes]
rs9584488	1.00[EUR][1000 genomes]
rs9584503	1.00[EUR][1000 genomes]
rs9584504	1.00[EUR][1000 genomes]
rs9584508	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530742	chr13:96917313-97627023	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
2	nsv832693	chr13:97594845-97777481	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97598000-97599000	Weak transcription	Esophagus	oesophagus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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