Variant report

Variant	rs9584503
Chromosome Location	chr13:97763082-97763083
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:97761531..97763400-chr13:97864695..97865888,12	MCF-7	breast:
2	chr13:97761028..97763685-chr13:97986933..97989149,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs12016692	1.00[EUR][1000 genomes]
rs12016824	1.00[EUR][1000 genomes]
rs13378288	1.00[EUR][1000 genomes]
rs13378951	1.00[EUR][1000 genomes]
rs16953949	1.00[EUR][1000 genomes]
rs1999833	1.00[EUR][1000 genomes]
rs28488241	1.00[EUR][1000 genomes]
rs4053687	1.00[EUR][1000 genomes]
rs61438383	1.00[EUR][1000 genomes]
rs61710613	1.00[EUR][1000 genomes]
rs7317397	1.00[EUR][1000 genomes]
rs7325474	1.00[EUR][1000 genomes]
rs7325854	1.00[EUR][1000 genomes]
rs73549299	1.00[EUR][1000 genomes]
rs7492110	1.00[EUR][1000 genomes]
rs9300381	1.00[EUR][1000 genomes]
rs9300388	1.00[EUR][1000 genomes]
rs9300390	1.00[EUR][1000 genomes]
rs9300391	1.00[EUR][1000 genomes]
rs9582111	1.00[EUR][1000 genomes]
rs9582112	1.00[EUR][1000 genomes]
rs9582113	1.00[EUR][1000 genomes]
rs9582114	1.00[EUR][1000 genomes]
rs9582119	1.00[EUR][1000 genomes]
rs9582120	1.00[EUR][1000 genomes]
rs9582123	1.00[EUR][1000 genomes]
rs9584460	1.00[EUR][1000 genomes]
rs9584488	1.00[EUR][1000 genomes]
rs9584504	1.00[EUR][1000 genomes]
rs9584508	1.00[EUR][1000 genomes]
rs9584514	1.00[EUR][1000 genomes]
rs9584519	1.00[EUR][1000 genomes]
rs9584521	1.00[EUR][1000 genomes]
rs9584523	1.00[EUR][1000 genomes]
rs9584525	1.00[EUR][1000 genomes]
rs9584531	1.00[EUR][1000 genomes]
rs9584536	1.00[EUR][1000 genomes]
rs9584543	1.00[EUR][1000 genomes]
rs9584548	1.00[EUR][1000 genomes]
rs9805852	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832693	chr13:97594845-97777481	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97758600-97763600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr13:97760400-97766000	Weak transcription	Aorta	Aorta
3	chr13:97760600-97770200	Enhancers	Fetal Stomach	stomach
4	chr13:97761800-97763600	Enhancers	NH-A	brain
5	chr13:97762000-97763400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr13:97762000-97765600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr13:97762000-97770600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr13:97762200-97763600	Weak transcription	Lung	lung
9	chr13:97762200-97764200	Weak transcription	Small Intestine	intestine
10	chr13:97762200-97765200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr13:97762200-97765200	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr13:97762400-97764200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr13:97762400-97767000	Enhancers	Rectal Smooth Muscle	rectum
14	chr13:97762600-97763200	Enhancers	Fetal Muscle Leg	muscle
15	chr13:97762600-97764200	Weak transcription	Brain Substantia Nigra	brain
16	chr13:97762600-97764600	Weak transcription	HSMMtube	muscle
17	chr13:97762600-97764800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr13:97762600-97765400	Enhancers	Brain Hippocampus Middle	brain
19	chr13:97762600-97765800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr13:97762600-97765800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr13:97762600-97765800	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr13:97762600-97765800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr13:97762600-97765800	Enhancers	Brain Anterior Caudate	brain
24	chr13:97762600-97765800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
25	chr13:97762600-97765800	Weak transcription	Duodenum Mucosa	Duodenum
26	chr13:97762600-97765800	Weak transcription	Fetal Brain Female	brain
27	chr13:97762600-97765800	Weak transcription	Fetal Intestine Large	intestine
28	chr13:97762600-97766200	Weak transcription	Fetal Kidney	kidney
29	chr13:97762600-97768000	Enhancers	A549	lung
30	chr13:97762800-97763600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr13:97762800-97763600	Weak transcription	Ovary	ovary
32	chr13:97762800-97763800	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr13:97762800-97763800	Weak transcription	Stomach Smooth Muscle	stomach
34	chr13:97762800-97764200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr13:97762800-97764200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr13:97762800-97764200	Weak transcription	Brain Angular Gyrus	brain
37	chr13:97762800-97764200	Weak transcription	Brain Cingulate Gyrus	brain
38	chr13:97762800-97764200	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr13:97762800-97764200	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr13:97762800-97764400	Weak transcription	Fetal Heart	heart
41	chr13:97762800-97765200	Weak transcription	Fetal Brain Male	brain
42	chr13:97762800-97765800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr13:97762800-97765800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr13:97762800-97765800	Weak transcription	Brain Germinal Matrix	brain
45	chr13:97762800-97765800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr13:97762800-97765800	Weak transcription	Fetal Intestine Small	intestine
47	chr13:97762800-97765800	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr13:97762800-97766000	Weak transcription	Primary T helper cells PMA-I stimulated	--
49	chr13:97762800-97766000	Weak transcription	Left Ventricle	heart
50	chr13:97762800-97766000	Weak transcription	Right Atrium	heart

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