Variant report

Variant	rs9584514
Chromosome Location	chr13:97793898-97793899
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:97785432..97787983-chr13:97793170..97794870,3	MCF-7	breast:
2	chr13:97793669..97794439-chr17:4843375..4844029,2	HCT-116	colon:
3	chr13:97792540..97794724-chr13:97910045..97912283,3	K562	blood:
4	chr13:97793649..97795166-chr13:97797379..97799703,2	MCF-7	breast:
5	chr13:97789069..97794606-chr13:97796016..97800489,5	K562	blood:
6	chr13:97791209..97794724-chr13:97910045..97913597,5	K562	blood:
7	chr13:97791984..97795803-chr13:97797601..97802176,4	K562	blood:

Variant related genes	Relation type
ENSG00000108523	Chromatin interaction
ENSG00000108528	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs12016692	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12016824	1.00[EUR][1000 genomes]
rs13378288	1.00[EUR][1000 genomes]
rs13378951	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16953949	0.81[LWK][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1999833	1.00[EUR][1000 genomes]
rs28488241	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4053687	1.00[EUR][1000 genomes]
rs61438383	1.00[EUR][1000 genomes]
rs61710613	1.00[EUR][1000 genomes]
rs7317397	1.00[EUR][1000 genomes]
rs7325474	1.00[EUR][1000 genomes]
rs7325854	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs74106924	1.00[EUR][1000 genomes]
rs74106934	1.00[EUR][1000 genomes]
rs7492110	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9300381	1.00[EUR][1000 genomes]
rs9300388	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9300390	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9300391	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9582111	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9582112	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9582113	1.00[EUR][1000 genomes]
rs9582114	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9582119	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9582120	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9582123	1.00[EUR][1000 genomes]
rs9582127	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9584460	1.00[EUR][1000 genomes]
rs9584488	1.00[EUR][1000 genomes]
rs9584503	1.00[EUR][1000 genomes]
rs9584504	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584508	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584509	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9584519	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584521	1.00[ASW][hapmap];0.84[LWK][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584523	1.00[EUR][1000 genomes]
rs9584525	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584531	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584536	1.00[EUR][1000 genomes]
rs9584543	1.00[EUR][1000 genomes]
rs9584548	1.00[EUR][1000 genomes]
rs9584553	1.00[EUR][1000 genomes]
rs9805852	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053686	chr13:97771607-97802296	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97787000-97799000	Weak transcription	Lung	lung
2	chr13:97791800-97794000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr13:97791800-97794200	Enhancers	Placenta Amnion	Placenta Amnion
4	chr13:97792000-97794000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr13:97792000-97794000	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr13:97792000-97794400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr13:97792000-97794400	Enhancers	HMEC	breast
8	chr13:97792200-97794000	Weak transcription	GM12878-XiMat	blood
9	chr13:97792200-97794600	Enhancers	Brain Angular Gyrus	brain
10	chr13:97792200-97796400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr13:97792400-97794000	Enhancers	Duodenum Mucosa	Duodenum
12	chr13:97792400-97794600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr13:97792600-97794200	Enhancers	Fetal Brain Female	brain
14	chr13:97792800-97794000	Enhancers	Brain Cingulate Gyrus	brain
15	chr13:97792800-97794000	Enhancers	Duodenum Smooth Muscle	Duodenum
16	chr13:97792800-97794000	Enhancers	Fetal Intestine Large	intestine
17	chr13:97792800-97794000	Enhancers	Fetal Intestine Small	intestine
18	chr13:97792800-97794000	Enhancers	HepG2	liver
19	chr13:97792800-97794200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr13:97792800-97794600	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr13:97793000-97794200	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr13:97793000-97794800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr13:97793000-97795000	Enhancers	NH-A	brain
24	chr13:97793200-97794000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr13:97793200-97794000	Enhancers	Stomach Mucosa	stomach
26	chr13:97793200-97794000	Enhancers	HSMMtube	muscle
27	chr13:97793200-97794200	Flanking Active TSS	NHDF-Ad	bronchial
28	chr13:97793200-97794400	Enhancers	NHEK	skin
29	chr13:97793200-97794600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr13:97793200-97794800	Enhancers	Hela-S3	cervix
31	chr13:97793200-97795000	Enhancers	Colon Smooth Muscle	Colon
32	chr13:97793200-97795200	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
33	chr13:97793400-97794000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr13:97793400-97794000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr13:97793400-97794000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr13:97793400-97794000	Enhancers	Adipose Nuclei	Adipose
37	chr13:97793400-97794000	Enhancers	Esophagus	oesophagus
38	chr13:97793400-97794000	Enhancers	Fetal Brain Male	brain
39	chr13:97793400-97794000	Enhancers	Skeletal Muscle Female	skeletal muscle
40	chr13:97793400-97794000	Enhancers	HUVEC	blood vessel
41	chr13:97793400-97794200	Enhancers	H9 Cell Line	embryonic stem cell
42	chr13:97793400-97794200	Enhancers	Cortex derived primary cultured neurospheres	brain
43	chr13:97793400-97794200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr13:97793400-97794200	Enhancers	K562	blood
45	chr13:97793400-97794400	Enhancers	Fetal Stomach	stomach
46	chr13:97793400-97794600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr13:97793400-97795000	Active TSS	Colonic Mucosa	Colon
48	chr13:97793400-97795800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr13:97793400-97795800	Active TSS	Rectal Mucosa Donor 29	rectum
50	chr13:97793400-97797000	Enhancers	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links