Variant report
| Variant | rs4053687 |
|---|---|
| Chromosome Location | chr13:97804074-97804075 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr13:97799762..97802960-chr13:97803029..97806016,3 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:43)
| rs_ID | r2[population] |
|---|---|
| rs12016692 | 1.00[EUR][1000 genomes] |
| rs12016824 | 1.00[EUR][1000 genomes] |
| rs13378288 | 1.00[EUR][1000 genomes] |
| rs13378951 | 1.00[EUR][1000 genomes] |
| rs16953949 | 1.00[EUR][1000 genomes] |
| rs1999833 | 1.00[EUR][1000 genomes] |
| rs28488241 | 1.00[EUR][1000 genomes] |
| rs61438383 | 1.00[EUR][1000 genomes] |
| rs61710613 | 1.00[EUR][1000 genomes] |
| rs7317397 | 1.00[EUR][1000 genomes] |
| rs7325474 | 1.00[EUR][1000 genomes] |
| rs7325854 | 1.00[EUR][1000 genomes] |
| rs74106924 | 1.00[EUR][1000 genomes] |
| rs74106934 | 1.00[EUR][1000 genomes] |
| rs7492110 | 1.00[EUR][1000 genomes] |
| rs9300381 | 1.00[EUR][1000 genomes] |
| rs9300388 | 1.00[EUR][1000 genomes] |
| rs9300390 | 1.00[EUR][1000 genomes] |
| rs9300391 | 1.00[EUR][1000 genomes] |
| rs9582111 | 1.00[EUR][1000 genomes] |
| rs9582112 | 1.00[EUR][1000 genomes] |
| rs9582113 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9582114 | 1.00[EUR][1000 genomes] |
| rs9582119 | 1.00[EUR][1000 genomes] |
| rs9582120 | 1.00[EUR][1000 genomes] |
| rs9582123 | 1.00[EUR][1000 genomes] |
| rs9582127 | 1.00[EUR][1000 genomes] |
| rs9584460 | 1.00[EUR][1000 genomes] |
| rs9584488 | 1.00[EUR][1000 genomes] |
| rs9584503 | 1.00[EUR][1000 genomes] |
| rs9584504 | 1.00[EUR][1000 genomes] |
| rs9584508 | 1.00[EUR][1000 genomes] |
| rs9584514 | 1.00[EUR][1000 genomes] |
| rs9584519 | 1.00[EUR][1000 genomes] |
| rs9584521 | 1.00[EUR][1000 genomes] |
| rs9584523 | 1.00[EUR][1000 genomes] |
| rs9584525 | 1.00[EUR][1000 genomes] |
| rs9584531 | 1.00[EUR][1000 genomes] |
| rs9584536 | 1.00[EUR][1000 genomes] |
| rs9584543 | 1.00[EUR][1000 genomes] |
| rs9584548 | 1.00[EUR][1000 genomes] |
| rs9584553 | 1.00[EUR][1000 genomes] |
| rs9805852 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1137 | chr13:97803474-97848814 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:97799200-97814800 | Weak transcription | Foreskin Melanocyte Primary Cells skin01 | Skin |
| 2 | chr13:97804000-97805400 | Enhancers | Breast Myoepithelial Primary Cells | Breast |
