Variant report

Variant	rs9582112
Chromosome Location	chr13:97774283-97774284
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:97773536..97776027-chr13:97843320..97845998,2	MCF-7	breast:
2	chr13:97773812..97776578-chr13:97779026..97783361,3	MCF-7	breast:
3	chr13:97768370..97770403-chr13:97772798..97774426,2	MCF-7	breast:
4	chr13:97772914..97774476-chr13:97788808..97791555,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs12016692	1.00[EUR][1000 genomes]
rs12016824	1.00[EUR][1000 genomes]
rs13378288	1.00[EUR][1000 genomes]
rs13378951	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16953949	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1999833	1.00[EUR][1000 genomes]
rs28488241	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4053687	1.00[EUR][1000 genomes]
rs61438383	1.00[EUR][1000 genomes]
rs61710613	1.00[EUR][1000 genomes]
rs7317397	1.00[EUR][1000 genomes]
rs7325474	1.00[EUR][1000 genomes]
rs7325854	1.00[EUR][1000 genomes]
rs73549299	1.00[EUR][1000 genomes]
rs74106924	1.00[EUR][1000 genomes]
rs7492110	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9300381	1.00[EUR][1000 genomes]
rs9300388	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9300390	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9300391	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9582111	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9582113	1.00[EUR][1000 genomes]
rs9582114	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9582119	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9582120	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9582123	1.00[EUR][1000 genomes]
rs9582127	1.00[EUR][1000 genomes]
rs9584460	1.00[EUR][1000 genomes]
rs9584488	1.00[EUR][1000 genomes]
rs9584503	1.00[EUR][1000 genomes]
rs9584504	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584508	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584509	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9584514	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584519	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584521	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584523	1.00[EUR][1000 genomes]
rs9584525	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584531	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584536	1.00[EUR][1000 genomes]
rs9584543	1.00[EUR][1000 genomes]
rs9584548	1.00[EUR][1000 genomes]
rs9584553	1.00[EUR][1000 genomes]
rs9805852	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832693	chr13:97594845-97777481	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1053686	chr13:97771607-97802296	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97766800-97778200	Weak transcription	Esophagus	oesophagus
2	chr13:97767800-97776600	Weak transcription	Gastric	stomach
3	chr13:97767800-97777200	Weak transcription	Fetal Kidney	kidney
4	chr13:97768000-97777000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr13:97768800-97775600	Weak transcription	Lung	lung
6	chr13:97768800-97776200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr13:97769000-97778400	Weak transcription	Right Atrium	heart
8	chr13:97769200-97774800	Weak transcription	Brain Hippocampus Middle	brain
9	chr13:97770000-97774800	Weak transcription	Stomach Mucosa	stomach
10	chr13:97770200-97775000	Weak transcription	Aorta	Aorta
11	chr13:97770200-97775000	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr13:97770200-97775000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr13:97770200-97776600	Weak transcription	Fetal Stomach	stomach
14	chr13:97770200-97777200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr13:97770400-97777000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr13:97770600-97774600	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr13:97770800-97775000	Weak transcription	Ovary	ovary
18	chr13:97770800-97775000	Weak transcription	Stomach Smooth Muscle	stomach
19	chr13:97770800-97776200	Weak transcription	Left Ventricle	heart
20	chr13:97770800-97777400	Weak transcription	Psoas Muscle	Psoas
21	chr13:97771400-97775800	Enhancers	NHEK	skin
22	chr13:97771400-97777800	Enhancers	HMEC	breast
23	chr13:97771400-97779600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr13:97771600-97775600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr13:97771800-97775800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr13:97772000-97775800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr13:97772400-97774400	Enhancers	Muscle Satellite Cultured Cells	--
28	chr13:97772400-97775400	Enhancers	Placenta Amnion	Placenta Amnion
29	chr13:97772400-97775800	Enhancers	Osteobl	bone
30	chr13:97772400-97778800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr13:97772600-97774800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr13:97772600-97774800	Weak transcription	Rectal Smooth Muscle	rectum
33	chr13:97772600-97777400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr13:97772800-97774400	Enhancers	NH-A	brain
35	chr13:97772800-97775800	Enhancers	NHLF	lung
36	chr13:97772800-97777400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr13:97772800-97779000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr13:97773000-97774600	Enhancers	HSMM	muscle
39	chr13:97773000-97774800	Weak transcription	Brain Cingulate Gyrus	brain
40	chr13:97773000-97774800	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr13:97773000-97775000	Weak transcription	Brain Angular Gyrus	brain
42	chr13:97773000-97775000	Weak transcription	Brain Anterior Caudate	brain
43	chr13:97773000-97776600	Weak transcription	Brain Substantia Nigra	brain
44	chr13:97773000-97777600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr13:97773200-97774800	Weak transcription	Colon Smooth Muscle	Colon
46	chr13:97773200-97778200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr13:97773400-97777000	Enhancers	Fetal Lung	lung
48	chr13:97773400-97779000	Enhancers	HSMMtube	muscle
49	chr13:97773400-97779600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr13:97773600-97774400	Enhancers	K562	blood

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