Variant report

Variant	rs9584509
Chromosome Location	chr13:97785927-97785928
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs13378951	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16953949	1.00[AMR][1000 genomes]
rs28488241	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7492110	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9300388	1.00[AMR][1000 genomes]
rs9300390	1.00[AMR][1000 genomes]
rs9300391	1.00[AMR][1000 genomes]
rs9582111	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9582112	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9582114	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9582119	1.00[AMR][1000 genomes]
rs9582120	1.00[AMR][1000 genomes]
rs9584504	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9584508	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9584514	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9584519	1.00[AMR][1000 genomes]
rs9584521	1.00[AMR][1000 genomes]
rs9584525	1.00[AMR][1000 genomes]
rs9584531	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053686	chr13:97771607-97802296	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97778800-97788200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr13:97779000-97786200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr13:97779000-97788400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr13:97783400-97792600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr13:97784000-97788600	Weak transcription	Brain Substantia Nigra	brain
6	chr13:97784400-97786400	Weak transcription	Placenta	Placenta
7	chr13:97784400-97793400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr13:97784400-97793400	Weak transcription	K562	blood
9	chr13:97784800-97786200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr13:97785200-97786800	Enhancers	Pancreatic Islets	Pancreatic Islet
11	chr13:97785600-97786000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr13:97785600-97786000	Enhancers	A549	lung
13	chr13:97785600-97787000	Enhancers	Lung	lung
14	chr13:97785800-97786400	Enhancers	HepG2	liver
15	chr13:97785800-97787200	Enhancers	Gastric	stomach
16	chr13:97785800-97787200	Enhancers	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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