Variant report

Variant	rs9300388
Chromosome Location	chr13:97762799-97762800
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:97761531..97763400-chr13:97864695..97865888,12	MCF-7	breast:
2	chr13:97761860..97762834-chr13:97996407..97997442,4	K562	blood:
3	chr13:97761028..97763685-chr13:97986933..97989149,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs12016692	1.00[EUR][1000 genomes]
rs12016824	1.00[EUR][1000 genomes]
rs13378288	1.00[EUR][1000 genomes]
rs13378951	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16953949	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1999833	1.00[EUR][1000 genomes]
rs28488241	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4053687	1.00[EUR][1000 genomes]
rs61438383	1.00[EUR][1000 genomes]
rs61710613	1.00[EUR][1000 genomes]
rs7317397	1.00[EUR][1000 genomes]
rs7325474	1.00[EUR][1000 genomes]
rs7325854	1.00[EUR][1000 genomes]
rs73549299	1.00[EUR][1000 genomes]
rs7492110	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9300381	1.00[EUR][1000 genomes]
rs9300390	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9300391	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9582111	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9582112	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9582113	1.00[EUR][1000 genomes]
rs9582114	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9582119	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9582120	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9582123	1.00[EUR][1000 genomes]
rs9584460	1.00[EUR][1000 genomes]
rs9584488	1.00[EUR][1000 genomes]
rs9584503	1.00[EUR][1000 genomes]
rs9584504	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584508	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584509	1.00[AMR][1000 genomes]
rs9584514	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584519	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584521	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584523	1.00[EUR][1000 genomes]
rs9584525	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584531	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584536	1.00[EUR][1000 genomes]
rs9584543	1.00[EUR][1000 genomes]
rs9584548	1.00[EUR][1000 genomes]
rs9805852	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832693	chr13:97594845-97777481	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97758600-97763600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr13:97760200-97762800	Enhancers	Fetal Brain Male	brain
3	chr13:97760200-97762800	Enhancers	Ovary	ovary
4	chr13:97760400-97766000	Weak transcription	Aorta	Aorta
5	chr13:97760600-97762800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr13:97760600-97770200	Enhancers	Fetal Stomach	stomach
7	chr13:97760800-97762800	Enhancers	Right Atrium	heart
8	chr13:97760800-97763000	Enhancers	Colon Smooth Muscle	Colon
9	chr13:97761400-97762800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr13:97761400-97762800	Enhancers	HMEC	breast
11	chr13:97761600-97762800	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr13:97761600-97762800	Enhancers	HUVEC	blood vessel
13	chr13:97761600-97763000	Enhancers	Placenta	Placenta
14	chr13:97761800-97762800	Enhancers	Liver	Liver
15	chr13:97761800-97762800	Enhancers	Brain Germinal Matrix	brain
16	chr13:97761800-97762800	Bivalent Enhancer	Fetal Thymus	thymus
17	chr13:97761800-97762800	Enhancers	Left Ventricle	heart
18	chr13:97761800-97762800	Enhancers	Stomach Mucosa	stomach
19	chr13:97761800-97762800	Flanking Active TSS	Hela-S3	cervix
20	chr13:97761800-97762800	Enhancers	NHLF	lung
21	chr13:97761800-97763600	Enhancers	NH-A	brain
22	chr13:97762000-97762800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr13:97762000-97762800	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr13:97762000-97762800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr13:97762000-97762800	Enhancers	Primary T cells fromperipheralblood	blood
26	chr13:97762000-97762800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
27	chr13:97762000-97762800	Enhancers	Primary T helper cells PMA-I stimulated	--
28	chr13:97762000-97762800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr13:97762000-97762800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr13:97762000-97762800	Enhancers	Fetal Heart	heart
31	chr13:97762000-97762800	Flanking Active TSS	Fetal Lung	lung
32	chr13:97762000-97762800	Enhancers	Placenta Amnion	Placenta Amnion
33	chr13:97762000-97762800	Enhancers	Dnd41	blood
34	chr13:97762000-97762800	Enhancers	NHDF-Ad	bronchial
35	chr13:97762000-97763400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr13:97762000-97765600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr13:97762000-97770600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr13:97762200-97762800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr13:97762200-97762800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
40	chr13:97762200-97762800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr13:97762200-97762800	Enhancers	Adipose Nuclei	Adipose
42	chr13:97762200-97762800	Enhancers	Fetal Intestine Small	intestine
43	chr13:97762200-97762800	Enhancers	HSMM	muscle
44	chr13:97762200-97762800	Enhancers	NHEK	skin
45	chr13:97762200-97763000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
46	chr13:97762200-97763600	Weak transcription	Lung	lung
47	chr13:97762200-97764200	Weak transcription	Small Intestine	intestine
48	chr13:97762200-97765200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr13:97762200-97765200	Weak transcription	Pancreatic Islets	Pancreatic Islet
50	chr13:97762400-97762800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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