Variant report

Variant	rs61438383
Chromosome Location	chr13:97962149-97962150
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:97954626..97957097-chr13:97959109..97962404,3	K562	blood:
2	chr13:97957359..97960003-chr13:97961704..97963418,2	MCF-7	breast:
3	chr13:97957571..97959478-chr13:97960414..97962646,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs12016692	1.00[EUR][1000 genomes]
rs12016824	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13378288	1.00[EUR][1000 genomes]
rs13378951	1.00[EUR][1000 genomes]
rs16953949	1.00[EUR][1000 genomes]
rs28488241	1.00[EUR][1000 genomes]
rs4053687	1.00[EUR][1000 genomes]
rs61710613	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7325854	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74106924	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74106934	1.00[EUR][1000 genomes]
rs7492110	1.00[EUR][1000 genomes]
rs9300388	1.00[EUR][1000 genomes]
rs9300390	1.00[EUR][1000 genomes]
rs9300391	1.00[EUR][1000 genomes]
rs9582111	1.00[EUR][1000 genomes]
rs9582112	1.00[EUR][1000 genomes]
rs9582113	1.00[EUR][1000 genomes]
rs9582114	1.00[EUR][1000 genomes]
rs9582119	1.00[EUR][1000 genomes]
rs9582120	1.00[EUR][1000 genomes]
rs9582123	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9582127	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584503	1.00[EUR][1000 genomes]
rs9584504	1.00[EUR][1000 genomes]
rs9584508	1.00[EUR][1000 genomes]
rs9584514	1.00[EUR][1000 genomes]
rs9584519	1.00[EUR][1000 genomes]
rs9584521	1.00[EUR][1000 genomes]
rs9584523	1.00[EUR][1000 genomes]
rs9584525	1.00[EUR][1000 genomes]
rs9584531	1.00[EUR][1000 genomes]
rs9584536	1.00[EUR][1000 genomes]
rs9584543	1.00[EUR][1000 genomes]
rs9584545	0.97[AFR][1000 genomes]
rs9584548	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584553	1.00[EUR][1000 genomes]
rs9805852	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97925800-97987200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr13:97933200-97970400	Weak transcription	Placenta	Placenta
3	chr13:97942800-97995200	Weak transcription	Thymus	Thymus
4	chr13:97948600-97971600	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr13:97950000-97971200	Weak transcription	Stomach Mucosa	stomach
6	chr13:97950200-97965200	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr13:97950800-97965200	Weak transcription	Primary hematopoietic stem cells	blood
8	chr13:97951200-97962600	Enhancers	Brain Hippocampus Middle	brain
9	chr13:97954400-97986200	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr13:97955000-97964000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr13:97955000-97987000	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr13:97955200-97965600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr13:97955200-97968200	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr13:97955200-97970400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr13:97955200-97986800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr13:97955400-97971400	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr13:97955800-97965800	Weak transcription	Lung	lung
18	chr13:97957600-97962400	Enhancers	Brain Angular Gyrus	brain
19	chr13:97957800-97962400	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr13:97958000-97962200	Enhancers	NHLF	lung
21	chr13:97958200-97962400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr13:97958200-97962400	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr13:97958400-97962600	Enhancers	Brain Substantia Nigra	brain
24	chr13:97959000-97967800	Weak transcription	Esophagus	oesophagus
25	chr13:97959000-97970400	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr13:97959000-97971200	Weak transcription	Duodenum Mucosa	Duodenum
27	chr13:97959200-97968000	Weak transcription	Fetal Intestine Small	intestine
28	chr13:97959200-97970400	Weak transcription	Small Intestine	intestine
29	chr13:97959400-97988800	Weak transcription	Fetal Intestine Large	intestine
30	chr13:97959800-97962600	Strong transcription	Primary B cells from cord blood	blood
31	chr13:97959800-97964200	Enhancers	Left Ventricle	heart
32	chr13:97960000-97963000	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr13:97960200-97962400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr13:97960400-97962600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr13:97960400-97962600	Enhancers	Pancreas	Pancrea
36	chr13:97960600-97962400	Enhancers	HSMMtube	muscle
37	chr13:97960600-97962600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr13:97960600-97962600	Enhancers	Fetal Lung	lung
39	chr13:97960600-97963000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr13:97960800-97962600	Enhancers	Brain Cingulate Gyrus	brain
41	chr13:97960800-97962600	Genic enhancers	HepG2	liver
42	chr13:97960800-97967800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr13:97961000-97973800	Weak transcription	NHEK	skin
44	chr13:97961200-97962200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr13:97961200-97962200	Enhancers	NHDF-Ad	bronchial
46	chr13:97961200-97965600	Weak transcription	Stomach Smooth Muscle	stomach
47	chr13:97961200-97967600	Weak transcription	Aorta	Aorta
48	chr13:97961400-97963200	Weak transcription	Fetal Heart	heart
49	chr13:97961400-97965800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr13:97961400-97965800	Weak transcription	Fetal Stomach	stomach

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