Variant report

Variant	rs9582119
Chromosome Location	chr13:97883265-97883266
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:97881339..97883391-chr13:97887909..97890406,2	K562	blood:
2	chr13:97881905..97884779-chr13:97891796..97893713,2	MCF-7	breast:
3	chr13:97880037..97884832-chr13:97887961..97893299,6	MCF-7	breast:
4	chr13:97877439..97880041-chr13:97882132..97883793,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs12016692	1.00[EUR][1000 genomes]
rs12016824	1.00[EUR][1000 genomes]
rs13378288	1.00[EUR][1000 genomes]
rs13378951	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16953949	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1999833	1.00[EUR][1000 genomes]
rs28488241	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4053687	1.00[EUR][1000 genomes]
rs61438383	1.00[EUR][1000 genomes]
rs61710613	1.00[EUR][1000 genomes]
rs7325474	1.00[EUR][1000 genomes]
rs7325854	1.00[EUR][1000 genomes]
rs74106924	1.00[EUR][1000 genomes]
rs74106934	1.00[EUR][1000 genomes]
rs7492110	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9300388	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9300390	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9300391	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9582111	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9582112	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9582113	1.00[EUR][1000 genomes]
rs9582114	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9582120	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9582123	1.00[EUR][1000 genomes]
rs9582127	1.00[EUR][1000 genomes]
rs9584488	1.00[EUR][1000 genomes]
rs9584503	1.00[EUR][1000 genomes]
rs9584504	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584508	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584509	1.00[AMR][1000 genomes]
rs9584514	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584519	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584521	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584523	1.00[EUR][1000 genomes]
rs9584525	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584531	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584536	1.00[EUR][1000 genomes]
rs9584543	1.00[EUR][1000 genomes]
rs9584548	1.00[EUR][1000 genomes]
rs9584553	1.00[EUR][1000 genomes]
rs9805852	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045777	chr13:97875574-97955134	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97876600-97893800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr13:97878200-97896600	Weak transcription	HSMMtube	muscle
3	chr13:97878600-97883400	Weak transcription	Fetal Muscle Trunk	muscle
4	chr13:97879400-97883400	Weak transcription	Aorta	Aorta
5	chr13:97879600-97883600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr13:97879600-97886600	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr13:97879800-97883400	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr13:97879800-97883600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr13:97879800-97883600	Enhancers	Liver	Liver
10	chr13:97879800-97883600	Enhancers	Brain Angular Gyrus	brain
11	chr13:97879800-97883600	Weak transcription	HSMM	muscle
12	chr13:97879800-97885000	Weak transcription	Fetal Brain Male	brain
13	chr13:97879800-97886200	Genic enhancers	HepG2	liver
14	chr13:97879800-97887800	Enhancers	Right Atrium	heart
15	chr13:97879800-97893200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr13:97880000-97885600	Weak transcription	Fetal Brain Female	brain
17	chr13:97880200-97883400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr13:97880200-97883400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr13:97880200-97883400	Enhancers	Brain Cingulate Gyrus	brain
20	chr13:97880200-97883400	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr13:97880200-97883400	Weak transcription	Fetal Muscle Leg	muscle
22	chr13:97880200-97883600	Enhancers	Adipose Nuclei	Adipose
23	chr13:97880200-97883600	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr13:97880200-97883600	Weak transcription	Spleen	Spleen
25	chr13:97880200-97883600	Weak transcription	NHDF-Ad	bronchial
26	chr13:97880200-97883800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr13:97880200-97883800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr13:97880200-97884800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr13:97880200-97886200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr13:97880200-97886200	Enhancers	Fetal Lung	lung
31	chr13:97880200-97886600	Weak transcription	Esophagus	oesophagus
32	chr13:97880400-97883400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr13:97880400-97883400	Enhancers	Brain Hippocampus Middle	brain
34	chr13:97880400-97883400	Weak transcription	Fetal Heart	heart
35	chr13:97880400-97883600	Weak transcription	Thymus	Thymus
36	chr13:97880400-97884800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr13:97880400-97884800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr13:97880400-97885800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr13:97880400-97885800	Weak transcription	Fetal Intestine Small	intestine
40	chr13:97880400-97886000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr13:97880400-97886200	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr13:97880400-97886200	Enhancers	K562	blood
43	chr13:97880400-97887200	Weak transcription	Fetal Kidney	kidney
44	chr13:97880400-97888800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr13:97880400-97899400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
46	chr13:97880600-97883400	Weak transcription	Primary T helper cells PMA-I stimulated	--
47	chr13:97880600-97883600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr13:97880600-97883600	Weak transcription	Primary T cells from cord blood	blood
49	chr13:97880600-97883600	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr13:97880600-97885800	Weak transcription	Fetal Thymus	thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links