Variant report

Variant	rs16953949
Chromosome Location	chr13:97896115-97896116
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr13:97878961..97881885-chr13:97894343..97897721,4	K562	blood:
2	chr13:97892207..97896967-chr13:97905810..97911512,6	K562	blood:
3	chr13:97895427..97898016-chr13:98009372..98010999,2	MCF-7	breast:
4	chr13:97892207..97897500-chr13:97905924..97911512,9	K562	blood:
5	chr13:97877011..97878623-chr13:97895096..97896723,2	K562	blood:
6	chr13:97891761..97895595-chr13:97895855..97899530,6	K562	blood:
7	chr13:97889990..97892633-chr13:97895348..97898015,2	MCF-7	breast:
8	chr13:97890017..97893830-chr13:97894235..97897947,5	K562	blood:

No data

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs12016692	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12016824	1.00[EUR][1000 genomes]
rs13378288	1.00[EUR][1000 genomes]
rs13378951	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1999833	1.00[EUR][1000 genomes]
rs28488241	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4053687	1.00[EUR][1000 genomes]
rs61438383	1.00[EUR][1000 genomes]
rs61710613	1.00[EUR][1000 genomes]
rs7325474	1.00[EUR][1000 genomes]
rs7325854	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs74106924	1.00[EUR][1000 genomes]
rs74106934	1.00[EUR][1000 genomes]
rs7492110	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9300388	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9300390	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9300391	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9582111	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9582112	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9582113	1.00[EUR][1000 genomes]
rs9582114	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9582119	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9582120	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9582123	1.00[EUR][1000 genomes]
rs9582127	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9584488	1.00[EUR][1000 genomes]
rs9584503	1.00[EUR][1000 genomes]
rs9584504	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584508	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584509	1.00[AMR][1000 genomes]
rs9584514	0.81[LWK][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584519	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584521	1.00[ASW][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584523	1.00[EUR][1000 genomes]
rs9584525	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584531	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584536	1.00[EUR][1000 genomes]
rs9584543	1.00[EUR][1000 genomes]
rs9584548	1.00[EUR][1000 genomes]
rs9584553	1.00[EUR][1000 genomes]
rs9805852	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045777	chr13:97875574-97955134	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97878200-97896600	Weak transcription	HSMMtube	muscle
2	chr13:97880400-97899400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr13:97886200-97907200	Weak transcription	Fetal Thymus	thymus
4	chr13:97887200-97900000	Weak transcription	Hela-S3	cervix
5	chr13:97887400-97896200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr13:97888200-97896400	Enhancers	Duodenum Smooth Muscle	Duodenum
7	chr13:97888600-97900400	Enhancers	Rectal Smooth Muscle	rectum
8	chr13:97888600-97901400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr13:97890200-97898000	Enhancers	Duodenum Mucosa	Duodenum
10	chr13:97890400-97898800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr13:97891200-97909200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr13:97891200-97909400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr13:97891400-97898600	Enhancers	Adipose Nuclei	Adipose
14	chr13:97891400-97901600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr13:97891800-97900200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr13:97891800-97903200	Enhancers	Liver	Liver
17	chr13:97892000-97897800	Enhancers	Ovary	ovary
18	chr13:97892000-97902400	Weak transcription	NH-A	brain
19	chr13:97892600-97900400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr13:97892600-97908800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr13:97892800-97896400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr13:97892800-97909200	Weak transcription	Primary B cells from peripheral blood	blood
23	chr13:97893000-97896600	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr13:97893000-97906600	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr13:97893400-97896600	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr13:97893600-97899000	Enhancers	Fetal Heart	heart
27	chr13:97893800-97896600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr13:97893800-97897000	Flanking Active TSS	Brain Anterior Caudate	brain
29	chr13:97893800-97897000	Genic enhancers	K562	blood
30	chr13:97893800-97897200	Genic enhancers	Fetal Lung	lung
31	chr13:97894000-97901400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr13:97894200-97901400	Weak transcription	NHEK	skin
33	chr13:97894200-97903000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr13:97894400-97896800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr13:97894400-97896800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
36	chr13:97894400-97897800	Enhancers	Stomach Mucosa	stomach
37	chr13:97894400-97899000	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr13:97894400-97901800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr13:97894400-97901800	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr13:97894400-97902400	Weak transcription	Primary hematopoietic stem cells	blood
41	chr13:97894400-97902600	Weak transcription	Primary T cells from cord blood	blood
42	chr13:97894400-97903000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr13:97894400-97903200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr13:97894600-97896200	Enhancers	HUVEC	blood vessel
45	chr13:97894600-97898400	Enhancers	Breast Myoepithelial Primary Cells	Breast
46	chr13:97894600-97908600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr13:97894600-97909800	Weak transcription	Primary monocytes fromperipheralblood	blood
48	chr13:97894800-97896600	Enhancers	Fetal Brain Male	brain
49	chr13:97894800-97897800	Enhancers	Fetal Muscle Leg	muscle
50	chr13:97895200-97896800	Flanking Active TSS	HepG2	liver

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