Variant report

Variant	rs9584504
Chromosome Location	chr13:97766526-97766527
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:97766281..97768072-chr13:97784194..97787057,2	K562	blood:
2	chr13:97764752..97767509-chr13:97768479..97771289,2	K562	blood:
3	chr13:97765314..97767955-chr13:97872631..97875540,3	MCF-7	breast:
4	chr13:97766467..97768967-chr13:97995152..97997045,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000139793	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs12016692	1.00[EUR][1000 genomes]
rs12016824	1.00[EUR][1000 genomes]
rs13378288	1.00[EUR][1000 genomes]
rs13378951	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16953709	1.00[CEU][hapmap]
rs16953949	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1999833	1.00[EUR][1000 genomes]
rs28488241	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4053687	1.00[EUR][1000 genomes]
rs61438383	1.00[EUR][1000 genomes]
rs61710613	1.00[EUR][1000 genomes]
rs7317397	1.00[EUR][1000 genomes]
rs7325474	1.00[EUR][1000 genomes]
rs7325854	1.00[EUR][1000 genomes]
rs7333560	1.00[CEU][hapmap]
rs73549299	1.00[EUR][1000 genomes]
rs7492110	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9300381	1.00[EUR][1000 genomes]
rs9300388	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9300390	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9300391	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9582094	1.00[CEU][hapmap]
rs9582111	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9582112	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9582113	1.00[EUR][1000 genomes]
rs9582114	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9582119	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9582120	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9582123	1.00[EUR][1000 genomes]
rs9584460	1.00[EUR][1000 genomes]
rs9584462	1.00[CEU][hapmap]
rs9584488	1.00[EUR][1000 genomes]
rs9584503	1.00[EUR][1000 genomes]
rs9584508	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584509	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9584514	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584519	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584521	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584523	1.00[EUR][1000 genomes]
rs9584525	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584531	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584536	1.00[EUR][1000 genomes]
rs9584543	1.00[EUR][1000 genomes]
rs9584548	1.00[EUR][1000 genomes]
rs9805852	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832693	chr13:97594845-97777481	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97760600-97770200	Enhancers	Fetal Stomach	stomach
2	chr13:97762000-97770600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr13:97762400-97767000	Enhancers	Rectal Smooth Muscle	rectum
4	chr13:97762600-97768000	Enhancers	A549	lung
5	chr13:97762800-97766800	Enhancers	Fetal Lung	lung
6	chr13:97762800-97766800	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr13:97762800-97766800	Weak transcription	HUVEC	blood vessel
8	chr13:97762800-97767000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr13:97762800-97767000	Weak transcription	Adipose Nuclei	Adipose
10	chr13:97762800-97767000	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr13:97762800-97767000	Weak transcription	NHLF	lung
12	chr13:97762800-97767200	Weak transcription	Stomach Mucosa	stomach
13	chr13:97762800-97767400	Weak transcription	Liver	Liver
14	chr13:97762800-97767400	Weak transcription	Hela-S3	cervix
15	chr13:97762800-97768800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr13:97762800-97773600	Weak transcription	K562	blood
17	chr13:97763400-97767200	Enhancers	Colon Smooth Muscle	Colon
18	chr13:97763400-97767400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr13:97763600-97769000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr13:97763600-97770800	Enhancers	Ovary	ovary
21	chr13:97764000-97766600	Weak transcription	Gastric	stomach
22	chr13:97764200-97767400	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr13:97764600-97767200	Enhancers	HSMMtube	muscle
24	chr13:97764800-97767400	Enhancers	Stomach Smooth Muscle	stomach
25	chr13:97764800-97768800	Enhancers	Fetal Muscle Trunk	muscle
26	chr13:97765400-97768000	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr13:97765600-97766800	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr13:97765600-97767000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr13:97765600-97767400	Enhancers	Brain Angular Gyrus	brain
30	chr13:97765600-97768000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr13:97765600-97770800	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr13:97765800-97766600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
33	chr13:97765800-97767800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr13:97765800-97767800	Enhancers	Fetal Brain Female	brain
35	chr13:97765800-97767800	Enhancers	Fetal Intestine Small	intestine
36	chr13:97765800-97768000	Enhancers	Brain Germinal Matrix	brain
37	chr13:97765800-97770200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
38	chr13:97766000-97766800	Enhancers	Esophagus	oesophagus
39	chr13:97766000-97767200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr13:97766000-97767400	Enhancers	HSMM	muscle
41	chr13:97766000-97768000	Enhancers	Right Atrium	heart
42	chr13:97766000-97768600	Enhancers	Fetal Muscle Leg	muscle
43	chr13:97766000-97768600	Enhancers	Placenta	Placenta
44	chr13:97766000-97768800	Enhancers	Duodenum Smooth Muscle	Duodenum
45	chr13:97766000-97768800	Enhancers	Left Ventricle	heart
46	chr13:97766000-97770200	Enhancers	Aorta	Aorta
47	chr13:97766000-97770400	Enhancers	Fetal Heart	heart
48	chr13:97766200-97766600	Bivalent Enhancer	NHDF-Ad	bronchial
49	chr13:97766200-97767000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr13:97766200-97767000	Enhancers	Brain Inferior Temporal Lobe	brain

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