Variant report

Variant	rs7317397
Chromosome Location	chr13:97635977-97635978
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs13378951	1.00[EUR][1000 genomes]
rs1999833	1.00[EUR][1000 genomes]
rs28488241	1.00[EUR][1000 genomes]
rs4053687	1.00[EUR][1000 genomes]
rs7325474	1.00[EUR][1000 genomes]
rs73549299	1.00[EUR][1000 genomes]
rs7492110	1.00[EUR][1000 genomes]
rs9300371	1.00[EUR][1000 genomes]
rs9300381	1.00[EUR][1000 genomes]
rs9300388	1.00[EUR][1000 genomes]
rs9300390	1.00[EUR][1000 genomes]
rs9300391	1.00[EUR][1000 genomes]
rs9582078	1.00[EUR][1000 genomes]
rs9582111	1.00[EUR][1000 genomes]
rs9582112	1.00[EUR][1000 genomes]
rs9582113	1.00[EUR][1000 genomes]
rs9582114	1.00[EUR][1000 genomes]
rs9584460	1.00[EUR][1000 genomes]
rs9584488	1.00[EUR][1000 genomes]
rs9584503	1.00[EUR][1000 genomes]
rs9584504	1.00[EUR][1000 genomes]
rs9584508	1.00[EUR][1000 genomes]
rs9584514	1.00[EUR][1000 genomes]
rs9584519	1.00[EUR][1000 genomes]
rs9584521	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832693	chr13:97594845-97777481	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv3380074	chr13:97635686-97636265	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97630800-97646000	Weak transcription	Esophagus	oesophagus
2	chr13:97634200-97636200	Enhancers	Adipose Nuclei	Adipose
3	chr13:97634200-97636200	Enhancers	HUVEC	blood vessel
4	chr13:97634600-97636000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr13:97634600-97636200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr13:97634600-97637200	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr13:97634800-97636000	Enhancers	Muscle Satellite Cultured Cells	--
8	chr13:97634800-97636200	Enhancers	Primary hematopoietic stem cells	blood
9	chr13:97634800-97636600	Enhancers	Primary B cells from cord blood	blood
10	chr13:97635000-97636200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr13:97635000-97636400	Weak transcription	Brain Hippocampus Middle	brain
12	chr13:97635200-97636400	Weak transcription	NHEK	skin
13	chr13:97635400-97636600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
14	chr13:97635400-97639000	Weak transcription	Gastric	stomach
15	chr13:97635600-97636600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr13:97635600-97637000	Enhancers	Fetal Intestine Large	intestine
17	chr13:97635600-97637000	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr13:97635800-97636600	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr13:97635800-97636800	Active TSS	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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