Variant report

Variant	rs9582078
Chromosome Location	chr13:97554399-97554400
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1999833	1.00[EUR][1000 genomes]
rs7317397	1.00[EUR][1000 genomes]
rs7325474	1.00[EUR][1000 genomes]
rs73549299	1.00[EUR][1000 genomes]
rs9300371	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9300381	1.00[EUR][1000 genomes]
rs9584460	1.00[EUR][1000 genomes]
rs9584488	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530742	chr13:96917313-97627023	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
2	nsv562792	chr13:96976345-97563413	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97551600-97556000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr13:97553400-97556200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr13:97553400-97556400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr13:97553600-97556000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr13:97553600-97556200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr13:97553600-97556400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr13:97553600-97556400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr13:97553600-97561800	Weak transcription	Brain Hippocampus Middle	brain
9	chr13:97553800-97556200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr13:97553800-97556400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links