Variant report

Variant	rs9357278
Chromosome Location	chr6:12088618-12088619
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:12082403..12085689-chr6:12087080..12089060,3	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10498679	0.88[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap];0.92[ASN][1000 genomes]
rs1126472	0.91[YRI][hapmap]
rs12176308	0.88[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs2228220	0.91[YRI][hapmap]
rs3734271	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3777754	1.00[CEU][hapmap]
rs3777758	1.00[CEU][hapmap]
rs3777762	1.00[CEU][hapmap]
rs3777769	1.00[CEU][hapmap]
rs3777770	0.87[YRI][hapmap]
rs3777771	0.86[YRI][hapmap]
rs3777773	1.00[CEU][hapmap]
rs3822926	1.00[CEU][hapmap]
rs4467769	0.82[CHB][hapmap];0.95[ASN][1000 genomes]
rs55943468	0.92[ASN][1000 genomes]
rs56176088	0.92[ASN][1000 genomes]
rs6910959	0.88[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap];0.92[ASN][1000 genomes]
rs6916455	1.00[CEU][hapmap]
rs6928420	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6940075	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.97[ASN][1000 genomes]
rs72826076	0.95[ASN][1000 genomes]
rs7751398	1.00[CEU][hapmap]
rs9296253	0.86[CEU][hapmap];0.82[CHB][hapmap];0.92[ASN][1000 genomes]
rs9296262	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9349095	0.88[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap];0.92[ASN][1000 genomes]
rs9366970	0.88[CEU][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs9366972	0.88[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs9369070	0.88[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap];0.92[ASN][1000 genomes]
rs9369072	0.88[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap];0.92[ASN][1000 genomes]
rs9369074	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9380764	0.88[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs9394517	0.88[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs9394520	0.88[CEU][hapmap];0.82[CHB][hapmap]
rs9394526	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9394541	1.00[CEU][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9357278	PHACTR1	cis	inferior olivary nucleus	BrainEAC

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12061600-12105200	Weak transcription	Duodenum Mucosa	Duodenum
2	chr6:12061600-12109600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr6:12065200-12095000	Weak transcription	NHDF-Ad	bronchial
4	chr6:12066400-12093000	Weak transcription	Fetal Thymus	thymus
5	chr6:12066400-12103600	Weak transcription	Pancreas	Pancrea
6	chr6:12066400-12107600	Weak transcription	Fetal Muscle Leg	muscle
7	chr6:12066800-12109600	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr6:12068600-12090600	Weak transcription	Right Atrium	heart
9	chr6:12069600-12095200	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr6:12070000-12090600	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr6:12070800-12120400	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr6:12071600-12091800	Weak transcription	Esophagus	oesophagus
13	chr6:12071600-12093000	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr6:12071800-12094400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr6:12071800-12095400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr6:12071800-12098000	Weak transcription	NH-A	brain
17	chr6:12071800-12120400	Weak transcription	HepG2	liver
18	chr6:12072000-12093000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:12072200-12092400	Weak transcription	Thymus	Thymus
20	chr6:12072800-12089600	Weak transcription	HUVEC	blood vessel
21	chr6:12075800-12093400	Weak transcription	Colonic Mucosa	Colon
22	chr6:12077800-12088800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr6:12077800-12098000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr6:12077800-12113400	Weak transcription	HMEC	breast
25	chr6:12078000-12109800	Weak transcription	Fetal Muscle Trunk	muscle
26	chr6:12078400-12089800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr6:12078600-12092200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr6:12078600-12093000	Weak transcription	Primary hematopoietic stem cells	blood
29	chr6:12079200-12103600	Weak transcription	Fetal Intestine Large	intestine
30	chr6:12079400-12088800	Weak transcription	K562	blood
31	chr6:12079400-12089600	Weak transcription	NHEK	skin
32	chr6:12079400-12104600	Weak transcription	Fetal Intestine Small	intestine
33	chr6:12081800-12109800	Weak transcription	Aorta	Aorta
34	chr6:12082200-12090000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr6:12082200-12090800	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr6:12082200-12091800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
37	chr6:12082200-12111400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr6:12082200-12111400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr6:12082200-12112800	Weak transcription	Spleen	Spleen
40	chr6:12082600-12088800	Weak transcription	Primary B cells from cord blood	blood
41	chr6:12084000-12089600	Weak transcription	Primary T helper cells fromperipheralblood	blood
42	chr6:12084200-12089600	Weak transcription	Primary T cells from cord blood	blood
43	chr6:12084200-12093200	Weak transcription	Brain Substantia Nigra	brain
44	chr6:12084400-12089600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr6:12084400-12090600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr6:12084400-12090600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr6:12084400-12090800	Weak transcription	Brain Angular Gyrus	brain
48	chr6:12084400-12092600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr6:12084400-12092600	Weak transcription	HSMM	muscle
50	chr6:12084400-12097800	Weak transcription	NHLF	lung

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