Variant report

Variant	rs3734271
Chromosome Location	chr6:12129936-12129937
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:12122296..12124264-chr6:12129794..12132335,2	K562	blood:
2	chr6:12119694..12121745-chr6:12128409..12130383,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10498679	0.88[CEU][hapmap]
rs1126472	0.86[JPT][hapmap]
rs12176308	0.88[CEU][hapmap]
rs16872277	0.96[ASN][1000 genomes]
rs2228220	0.86[JPT][hapmap]
rs3777754	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.98[ASN][1000 genomes]
rs3777758	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.93[YRI][hapmap];0.98[ASN][1000 genomes]
rs3777762	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.98[ASN][1000 genomes]
rs3777769	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.98[ASN][1000 genomes]
rs3777770	0.86[JPT][hapmap]
rs3777771	0.86[JPT][hapmap]
rs3777773	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[YRI][hapmap];0.98[ASN][1000 genomes]
rs3822926	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.98[ASN][1000 genomes]
rs55718117	0.98[ASN][1000 genomes]
rs6907440	0.96[ASN][1000 genomes]
rs6910959	0.88[CEU][hapmap]
rs6916455	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6928420	1.00[CEU][hapmap]
rs6940075	1.00[CEU][hapmap];0.81[GIH][hapmap]
rs72826081	0.96[ASN][1000 genomes]
rs72826086	0.98[ASN][1000 genomes]
rs72826088	0.98[ASN][1000 genomes]
rs72826091	0.98[ASN][1000 genomes]
rs7751398	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.98[ASN][1000 genomes]
rs9296253	0.86[CEU][hapmap]
rs9296262	1.00[CEU][hapmap];0.85[CHB][hapmap];0.86[YRI][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9349095	0.88[CEU][hapmap]
rs9357278	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9366970	0.88[CEU][hapmap]
rs9366972	0.88[CEU][hapmap]
rs9366980	0.96[ASN][1000 genomes]
rs9369070	0.88[CEU][hapmap]
rs9369072	0.88[CEU][hapmap]
rs9369074	1.00[CEU][hapmap]
rs9369101	0.98[ASN][1000 genomes]
rs9369106	0.98[ASN][1000 genomes]
rs9380764	0.88[CEU][hapmap]
rs9380837	0.98[ASN][1000 genomes]
rs9394517	0.88[CEU][hapmap]
rs9394520	0.88[CEU][hapmap]
rs9394526	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9394540	0.96[ASN][1000 genomes]
rs9394541	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.96[ASN][1000 genomes]

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12091000-12130600	Weak transcription	Psoas Muscle	Psoas
2	chr6:12117200-12136800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr6:12118400-12138400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr6:12118800-12131400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr6:12119800-12138800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr6:12121400-12150200	Weak transcription	Fetal Brain Male	brain
7	chr6:12121600-12136800	Weak transcription	Hela-S3	cervix
8	chr6:12122000-12134600	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr6:12122000-12136600	Weak transcription	Osteobl	bone
10	chr6:12122000-12138200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr6:12122200-12132200	Weak transcription	A549	lung
12	chr6:12122200-12132200	Weak transcription	NHLF	lung
13	chr6:12122200-12137600	Weak transcription	Brain Anterior Caudate	brain
14	chr6:12122200-12137600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr6:12122200-12137600	Weak transcription	Brain Substantia Nigra	brain
16	chr6:12122200-12137800	Weak transcription	HMEC	breast
17	chr6:12122200-12138600	Weak transcription	Colonic Mucosa	Colon
18	chr6:12122200-12138600	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr6:12122200-12138600	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr6:12122200-12138800	Weak transcription	Ovary	ovary
21	chr6:12122200-12138800	Weak transcription	Stomach Smooth Muscle	stomach
22	chr6:12122200-12139000	Weak transcription	Spleen	Spleen
23	chr6:12122200-12139200	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr6:12122200-12161800	Weak transcription	Rectal Smooth Muscle	rectum
25	chr6:12122400-12130600	Weak transcription	Pancreas	Pancrea
26	chr6:12122400-12136400	Weak transcription	Small Intestine	intestine
27	chr6:12122400-12138200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr6:12122400-12138600	Weak transcription	Lung	lung
29	chr6:12122400-12139200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr6:12122400-12139200	Weak transcription	Placenta	Placenta
31	chr6:12122400-12139800	Weak transcription	Esophagus	oesophagus
32	chr6:12122600-12136000	Weak transcription	Fetal Lung	lung
33	chr6:12122600-12138200	Weak transcription	Primary B cells from cord blood	blood
34	chr6:12122600-12139000	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr6:12122800-12130000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr6:12122800-12130200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr6:12122800-12132800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr6:12122800-12137200	Weak transcription	NHDF-Ad	bronchial
39	chr6:12122800-12137800	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr6:12122800-12138400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr6:12122800-12138600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr6:12122800-12138600	Weak transcription	Gastric	stomach
43	chr6:12122800-12138600	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr6:12122800-12138600	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr6:12122800-12138800	Weak transcription	Fetal Kidney	kidney
46	chr6:12122800-12138800	Weak transcription	Right Ventricle	heart
47	chr6:12122800-12139400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr6:12122800-12142800	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr6:12123000-12138600	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr6:12123400-12138600	Weak transcription	Duodenum Mucosa	Duodenum

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