Variant report

Variant	rs72826086
Chromosome Location	chr6:12112160-12112161
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:12103778..12105799-chr6:12111875..12114584,2	K562	blood:
2	chr6:12111570..12113635-chr6:12113655..12115274,2	K562	blood:
3	chr6:12110206..12112482-chr6:12113768..12115429,2	K562	blood:
4	chr6:12110770..12113463-chr6:12121895..12124964,3	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs16872277	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3734271	0.98[ASN][1000 genomes]
rs3777754	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777758	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777762	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777769	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777773	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3822926	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55718117	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6907440	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6916455	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6928420	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6940075	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72826076	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72826081	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72826088	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72826091	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7751398	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9366972	0.81[EUR][1000 genomes]
rs9366980	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9369074	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9369101	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9369106	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380837	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9394540	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9394541	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870443	chr6:12096356-12125998	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12070800-12120400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr6:12071800-12120400	Weak transcription	HepG2	liver
3	chr6:12077800-12113400	Weak transcription	HMEC	breast
4	chr6:12082200-12112800	Weak transcription	Spleen	Spleen
5	chr6:12084800-12116600	Weak transcription	HSMMtube	muscle
6	chr6:12086000-12113200	Weak transcription	Ovary	ovary
7	chr6:12091000-12118800	Weak transcription	A549	lung
8	chr6:12091000-12130600	Weak transcription	Psoas Muscle	Psoas
9	chr6:12095600-12119200	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr6:12098400-12113200	Weak transcription	NHEK	skin
11	chr6:12098800-12112800	Weak transcription	NH-A	brain
12	chr6:12099000-12113000	Weak transcription	Osteobl	bone
13	chr6:12099000-12113200	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr6:12100000-12112800	Weak transcription	Lung	lung
15	chr6:12102600-12113400	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr6:12103800-12112800	Weak transcription	Right Ventricle	heart
17	chr6:12103800-12119200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr6:12103800-12120400	Weak transcription	Small Intestine	intestine
19	chr6:12106000-12120600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr6:12106000-12120600	Weak transcription	Esophagus	oesophagus
21	chr6:12106200-12112800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr6:12106200-12113200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr6:12106200-12120400	Weak transcription	Fetal Kidney	kidney
24	chr6:12106600-12113800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr6:12106800-12120400	Weak transcription	Gastric	stomach
26	chr6:12107400-12120400	Weak transcription	Rectal Smooth Muscle	rectum
27	chr6:12107400-12124800	Weak transcription	Colon Smooth Muscle	Colon
28	chr6:12107600-12112200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr6:12107600-12120800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr6:12107800-12120600	Weak transcription	Brain Angular Gyrus	brain
31	chr6:12108000-12117000	Weak transcription	Brain Substantia Nigra	brain
32	chr6:12108200-12120200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr6:12108400-12116600	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr6:12108400-12116800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr6:12108400-12120400	Weak transcription	Colonic Mucosa	Colon
36	chr6:12108600-12120200	Weak transcription	Stomach Smooth Muscle	stomach
37	chr6:12108600-12120400	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr6:12108800-12113000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr6:12109400-12112200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
40	chr6:12109400-12112400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
41	chr6:12109400-12112400	Enhancers	Primary T helper cells PMA-I stimulated	--
42	chr6:12109600-12112200	Enhancers	Primary T killer memory cells from peripheral blood	blood
43	chr6:12109600-12112200	Genic enhancers	GM12878-XiMat	blood
44	chr6:12109600-12115400	Enhancers	Primary T helper naive cells from peripheral blood	blood
45	chr6:12109800-12112200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr6:12109800-12114600	Strong transcription	Fetal Muscle Leg	muscle
47	chr6:12110000-12112800	Weak transcription	Placenta	Placenta
48	chr6:12110200-12114000	Weak transcription	Primary B cells from cord blood	blood
49	chr6:12110200-12114200	Weak transcription	Primary monocytes fromperipheralblood	blood
50	chr6:12110200-12120400	Weak transcription	Skeletal Muscle Male	skeletal muscle

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