Variant report

Variant	rs72826081
Chromosome Location	chr6:12093508-12093509
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs16872277	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3734271	0.96[ASN][1000 genomes]
rs3777754	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3777758	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3777762	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3777769	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3777773	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3822926	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55718117	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6907440	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6916455	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6928420	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6940075	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72826076	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72826086	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72826088	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72826091	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7751398	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9296262	0.81[ASN][1000 genomes]
rs9366972	0.81[EUR][1000 genomes]
rs9366980	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9369074	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9369101	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9369106	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9380837	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9394540	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9394541	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12061600-12105200	Weak transcription	Duodenum Mucosa	Duodenum
2	chr6:12061600-12109600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr6:12065200-12095000	Weak transcription	NHDF-Ad	bronchial
4	chr6:12066400-12103600	Weak transcription	Pancreas	Pancrea
5	chr6:12066400-12107600	Weak transcription	Fetal Muscle Leg	muscle
6	chr6:12066800-12109600	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr6:12069600-12095200	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr6:12070800-12120400	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr6:12071800-12094400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr6:12071800-12095400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr6:12071800-12098000	Weak transcription	NH-A	brain
12	chr6:12071800-12120400	Weak transcription	HepG2	liver
13	chr6:12077800-12098000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr6:12077800-12113400	Weak transcription	HMEC	breast
15	chr6:12078000-12109800	Weak transcription	Fetal Muscle Trunk	muscle
16	chr6:12079200-12103600	Weak transcription	Fetal Intestine Large	intestine
17	chr6:12079400-12104600	Weak transcription	Fetal Intestine Small	intestine
18	chr6:12081800-12109800	Weak transcription	Aorta	Aorta
19	chr6:12082200-12111400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr6:12082200-12111400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr6:12082200-12112800	Weak transcription	Spleen	Spleen
22	chr6:12084400-12097800	Weak transcription	NHLF	lung
23	chr6:12084600-12095200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr6:12084600-12109600	Weak transcription	Primary B cells from peripheral blood	blood
25	chr6:12084800-12095400	Weak transcription	Colon Smooth Muscle	Colon
26	chr6:12084800-12098000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr6:12084800-12116600	Weak transcription	HSMMtube	muscle
28	chr6:12085200-12095000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr6:12085600-12094000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr6:12085800-12094400	Weak transcription	Adipose Nuclei	Adipose
31	chr6:12085800-12095400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr6:12085800-12097600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr6:12085800-12104000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr6:12086000-12107600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr6:12086000-12109600	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr6:12086000-12113200	Weak transcription	Ovary	ovary
37	chr6:12088600-12111000	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr6:12088800-12111400	Weak transcription	Left Ventricle	heart
39	chr6:12090000-12095200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr6:12090200-12097800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr6:12090200-12098000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr6:12090800-12094400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr6:12090800-12109600	Weak transcription	Primary B cells from cord blood	blood
44	chr6:12091000-12103400	Weak transcription	Right Atrium	heart
45	chr6:12091000-12109600	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr6:12091000-12109600	Weak transcription	HUVEC	blood vessel
47	chr6:12091000-12118800	Weak transcription	A549	lung
48	chr6:12091000-12130600	Weak transcription	Psoas Muscle	Psoas
49	chr6:12091200-12095000	Weak transcription	Primary T helper cells fromperipheralblood	blood
50	chr6:12091200-12107400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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