Variant report

Variant	rs6907440
Chromosome Location	chr6:12104890-12104891
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:12097856..12101998-chr6:12102084..12105151,4	K562	blood:
2	chr6:12103778..12105799-chr6:12111875..12114584,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs16872277	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3734271	0.96[ASN][1000 genomes]
rs3777754	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3777758	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3777762	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3777769	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3777773	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3822926	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55718117	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6916455	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6928420	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6940075	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72826076	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72826081	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72826086	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72826088	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72826091	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7751398	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9296262	0.81[ASN][1000 genomes]
rs9366972	0.81[EUR][1000 genomes]
rs9366980	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9369074	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9369101	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9369106	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9380837	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9394540	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9394541	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870443	chr6:12096356-12125998	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12061600-12105200	Weak transcription	Duodenum Mucosa	Duodenum
2	chr6:12061600-12109600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr6:12066400-12107600	Weak transcription	Fetal Muscle Leg	muscle
4	chr6:12066800-12109600	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr6:12070800-12120400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr6:12071800-12120400	Weak transcription	HepG2	liver
7	chr6:12077800-12113400	Weak transcription	HMEC	breast
8	chr6:12078000-12109800	Weak transcription	Fetal Muscle Trunk	muscle
9	chr6:12081800-12109800	Weak transcription	Aorta	Aorta
10	chr6:12082200-12111400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr6:12082200-12111400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:12082200-12112800	Weak transcription	Spleen	Spleen
13	chr6:12084600-12109600	Weak transcription	Primary B cells from peripheral blood	blood
14	chr6:12084800-12116600	Weak transcription	HSMMtube	muscle
15	chr6:12086000-12107600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr6:12086000-12109600	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr6:12086000-12113200	Weak transcription	Ovary	ovary
18	chr6:12088600-12111000	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr6:12088800-12111400	Weak transcription	Left Ventricle	heart
20	chr6:12090800-12109600	Weak transcription	Primary B cells from cord blood	blood
21	chr6:12091000-12109600	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr6:12091000-12109600	Weak transcription	HUVEC	blood vessel
23	chr6:12091000-12118800	Weak transcription	A549	lung
24	chr6:12091000-12130600	Weak transcription	Psoas Muscle	Psoas
25	chr6:12091200-12107400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr6:12091200-12111000	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr6:12091200-12111800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr6:12093000-12109600	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr6:12093200-12109600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr6:12093200-12109800	Weak transcription	Fetal Thymus	thymus
31	chr6:12093400-12109600	Weak transcription	HSMM	muscle
32	chr6:12093400-12109800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr6:12093400-12110800	Weak transcription	Primary hematopoietic stem cells	blood
34	chr6:12095600-12119200	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr6:12095800-12105400	Weak transcription	Liver	Liver
36	chr6:12098200-12107400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr6:12098400-12111000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr6:12098400-12113200	Weak transcription	NHEK	skin
39	chr6:12098600-12109800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr6:12098800-12109600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr6:12098800-12109800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr6:12098800-12112800	Weak transcription	NH-A	brain
43	chr6:12099000-12109800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr6:12099000-12113000	Weak transcription	Osteobl	bone
45	chr6:12099000-12113200	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr6:12100000-12107800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr6:12100000-12112800	Weak transcription	Lung	lung
48	chr6:12100600-12109800	Weak transcription	Fetal Lung	lung
49	chr6:12100600-12111200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr6:12100800-12106800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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