Variant report

Variant	rs72826091
Chromosome Location	chr6:12114798-12114799
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:12107323..12109913-chr6:12113585..12115442,2	K562	blood:
2	chr6:12112236..12116140-chr6:12116213..12118749,4	K562	blood:
3	chr6:12110206..12112482-chr6:12113768..12115429,2	K562	blood:
4	chr6:12111570..12113635-chr6:12113655..12115274,2	K562	blood:
5	chr6:12113082..12115965-chr6:12149000..12150576,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs16872277	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3734271	0.98[ASN][1000 genomes]
rs3777754	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777758	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777762	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777769	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777773	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3822926	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55718117	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6907440	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6916455	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6928420	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6940075	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72826076	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72826081	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72826086	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72826088	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7751398	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9366972	0.81[EUR][1000 genomes]
rs9366980	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9369074	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9369101	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9369106	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380837	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9394540	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9394541	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870443	chr6:12096356-12125998	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12070800-12120400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr6:12071800-12120400	Weak transcription	HepG2	liver
3	chr6:12084800-12116600	Weak transcription	HSMMtube	muscle
4	chr6:12091000-12118800	Weak transcription	A549	lung
5	chr6:12091000-12130600	Weak transcription	Psoas Muscle	Psoas
6	chr6:12095600-12119200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr6:12103800-12119200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:12103800-12120400	Weak transcription	Small Intestine	intestine
9	chr6:12106000-12120600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr6:12106000-12120600	Weak transcription	Esophagus	oesophagus
11	chr6:12106200-12120400	Weak transcription	Fetal Kidney	kidney
12	chr6:12106800-12120400	Weak transcription	Gastric	stomach
13	chr6:12107400-12120400	Weak transcription	Rectal Smooth Muscle	rectum
14	chr6:12107400-12124800	Weak transcription	Colon Smooth Muscle	Colon
15	chr6:12107600-12120800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr6:12107800-12120600	Weak transcription	Brain Angular Gyrus	brain
17	chr6:12108000-12117000	Weak transcription	Brain Substantia Nigra	brain
18	chr6:12108200-12120200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr6:12108400-12116600	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr6:12108400-12116800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr6:12108400-12120400	Weak transcription	Colonic Mucosa	Colon
22	chr6:12108600-12120200	Weak transcription	Stomach Smooth Muscle	stomach
23	chr6:12108600-12120400	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr6:12109600-12115400	Enhancers	Primary T helper naive cells from peripheral blood	blood
25	chr6:12110200-12120400	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr6:12110800-12120400	Weak transcription	Hela-S3	cervix
27	chr6:12111200-12116600	Weak transcription	Adipose Nuclei	Adipose
28	chr6:12111200-12116800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr6:12111200-12120400	Weak transcription	Duodenum Mucosa	Duodenum
30	chr6:12111400-12120400	Weak transcription	Fetal Brain Male	brain
31	chr6:12111800-12115800	Weak transcription	Primary hematopoietic stem cells	blood
32	chr6:12111800-12116000	Weak transcription	Fetal Stomach	stomach
33	chr6:12111800-12116600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr6:12111800-12116600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
35	chr6:12112000-12115800	Weak transcription	Liver	Liver
36	chr6:12112000-12116000	Weak transcription	Fetal Intestine Large	intestine
37	chr6:12112000-12116400	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr6:12112000-12116600	Weak transcription	Aorta	Aorta
39	chr6:12112000-12116600	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr6:12112000-12119600	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr6:12112000-12120200	Weak transcription	Fetal Muscle Trunk	muscle
42	chr6:12112000-12120400	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr6:12112000-12120400	Weak transcription	Fetal Lung	lung
44	chr6:12112200-12116200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr6:12112200-12117000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr6:12112200-12120200	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr6:12112600-12115200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
48	chr6:12112600-12115200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
49	chr6:12112800-12115000	Enhancers	Primary T helper cells PMA-I stimulated	--
50	chr6:12112800-12115200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links