Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:15065231..15078374-chr6:15243362..15252213,26	MCF-7	breast:
2	chr6:15069314..15074049-chr6:15088016..15092585,9	MCF-7	breast:
3	chr6:15069299..15075541-chr6:15075577..15080851,9	K562	blood:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs16876061	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6928159	0.88[AMR][1000 genomes]
rs6928936	0.88[AMR][1000 genomes]
rs72832873	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72832876	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72832881	0.88[AMR][1000 genomes]
rs72832884	0.82[AMR][1000 genomes]
rs72832887	0.88[AMR][1000 genomes]
rs72832892	0.88[AMR][1000 genomes]
rs7767571	0.88[AMR][1000 genomes]
rs9349965	0.88[AMR][1000 genomes]
rs9358050	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9367860	0.88[AMR][1000 genomes]
rs9383017	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9383020	0.88[AMR][1000 genomes]
rs9383022	0.88[AMR][1000 genomes]
rs9383024	0.88[AMR][1000 genomes]
rs9396553	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9396554	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9396555	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9396556	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9396557	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883454	chr6:15009137-15081252	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15043800-15077400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:15058200-15074400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:15061200-15069800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr6:15067200-15076600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr6:15067400-15073200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:15067400-15076600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr6:15067600-15072600	Weak transcription	Stomach Mucosa	stomach
8	chr6:15067600-15076200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr6:15067800-15071600	Weak transcription	K562	blood
10	chr6:15067800-15073200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr6:15068600-15073600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr6:15068800-15077200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr6:15069000-15073400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr6:15069200-15076400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

Quick Search: