Variant report

Variant	rs72832876
Chromosome Location	chr6:15087283-15087284
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:15085631..15087442-chr6:15247939..15250462,2	MCF-7	breast:
2	chr6:15085986..15094450-chr6:15243173..15249347,32	MCF-7	breast:
3	chr6:15085296..15087452-chr6:15247424..15250055,2	K562	blood:
4	chr6:15086580..15087543-chr6:15222018..15222752,2	MCF-7	breast:
5	chr6:15086720..15088244-chr6:15243922..15246794,2	MCF-7	breast:
6	chr6:15086585..15088349-chr6:15089074..15091649,2	MCF-7	breast:
7	chr6:15086616..15088953-chr6:15137602..15139748,2	K562	blood:
8	chr6:15086004..15088226-chr6:17393882..17396155,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000112186	Chromatin interaction
ENSG00000271888	Chromatin interaction
ENSG00000234261	Chromatin interaction
ENSG00000008083	Chromatin interaction
ENSG00000235488	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs13191059	0.84[ASN][1000 genomes]
rs13210483	0.84[ASN][1000 genomes]
rs16876061	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4715965	0.84[ASN][1000 genomes]
rs6906466	0.89[ASN][1000 genomes]
rs6928159	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6928936	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6936729	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72832873	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72832881	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72832884	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72832887	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72832890	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72832892	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7756288	0.84[ASN][1000 genomes]
rs7767571	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9349965	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9358050	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9367859	0.88[ASN][1000 genomes]
rs9367860	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9370791	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9383017	0.92[EUR][1000 genomes]
rs9383020	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9383022	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9383024	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9383025	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9396553	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9396554	0.92[EUR][1000 genomes]
rs9396555	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9396556	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9396557	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9396558	0.82[ASN][1000 genomes]
rs9800553	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15077000-15090000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:15078800-15087400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:15080000-15089400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:15083800-15088200	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr6:15083800-15093000	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr6:15086200-15087400	Enhancers	Primary B cells from cord blood	blood
7	chr6:15086400-15088200	Transcr. at gene 5' and 3'	K562	blood
8	chr6:15086600-15087400	Enhancers	Right Ventricle	heart
9	chr6:15086600-15087800	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr6:15086600-15087800	Enhancers	Fetal Intestine Large	intestine
11	chr6:15086600-15088000	Enhancers	Fetal Intestine Small	intestine
12	chr6:15086600-15088200	Enhancers	Duodenum Mucosa	Duodenum
13	chr6:15086800-15087400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr6:15086800-15087400	Enhancers	Right Atrium	heart
15	chr6:15086800-15087600	Enhancers	Primary B cells from peripheral blood	blood
16	chr6:15086800-15087800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr6:15086800-15087800	Enhancers	Stomach Mucosa	stomach
18	chr6:15086800-15088200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
19	chr6:15087000-15087400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr6:15087000-15087600	Weak transcription	Primary hematopoietic stem cells	blood
21	chr6:15087000-15087800	Enhancers	Sigmoid Colon	Sigmoid Colon
22	chr6:15087200-15087600	Weak transcription	Fetal Kidney	kidney
23	chr6:15087200-15087600	Enhancers	Fetal Thymus	thymus
24	chr6:15087200-15091600	Enhancers	Placenta	Placenta

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