Variant report

Variant	rs9396558
Chromosome Location	chr6:15121201-15121202
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs13191059	0.89[ASN][1000 genomes]
rs13210483	0.90[ASN][1000 genomes]
rs35957683	0.91[ASN][1000 genomes]
rs4715965	0.98[ASN][1000 genomes]
rs6906466	0.93[ASN][1000 genomes]
rs6928159	0.81[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs6928936	0.81[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs6936729	0.93[ASN][1000 genomes]
rs72832873	0.82[ASN][1000 genomes]
rs72832876	0.82[ASN][1000 genomes]
rs72832881	0.92[ASN][1000 genomes]
rs72832884	0.81[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs72832887	0.81[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs72832890	0.99[ASN][1000 genomes]
rs72832892	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7756288	0.98[ASN][1000 genomes]
rs7767571	0.81[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs9349965	0.81[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs9358050	0.89[ASN][1000 genomes]
rs9367859	0.92[ASN][1000 genomes]
rs9367860	0.90[ASN][1000 genomes]
rs9383020	0.83[ASN][1000 genomes]
rs9383022	0.81[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs9383023	0.92[ASN][1000 genomes]
rs9383024	0.81[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs9383025	0.84[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs9396557	0.81[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs9800553	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1016007	chr6:15099585-15159098	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2762580	chr6:15105917-15159110	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15116400-15132000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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