Variant report

Variant	rs6936729
Chromosome Location	chr6:15111991-15111992
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:15111653-15112422	SK-N-MC	brain:	n/a	n/a
2	POLR2A	chr6:15111776-15112299	SK-N-MC	brain:	n/a	n/a

Variant related genes	Relation type
RN7SL332P	TF binding region

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs13191059	0.86[ASN][1000 genomes]
rs13210483	0.87[ASN][1000 genomes]
rs16876061	0.80[EUR][1000 genomes]
rs35957683	0.94[ASN][1000 genomes]
rs4715965	0.95[ASN][1000 genomes]
rs6906466	0.92[ASN][1000 genomes]
rs6928159	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6928936	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72832873	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72832876	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72832881	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72832884	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72832887	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72832890	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72832892	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7756288	0.95[ASN][1000 genomes]
rs7767571	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9349965	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9358050	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9367859	0.91[ASN][1000 genomes]
rs9367860	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9383020	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9383022	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9383023	0.89[ASN][1000 genomes]
rs9383024	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9383025	0.94[AFR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9396557	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9396558	0.93[ASN][1000 genomes]
rs9800553	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1016007	chr6:15099585-15159098	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2762580	chr6:15105917-15159110	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15087400-15117600	Weak transcription	Right Atrium	heart
2	chr6:15109400-15115800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:15109400-15116200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:15110600-15114800	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr6:15111000-15112000	Enhancers	K562	blood
6	chr6:15111400-15112000	Enhancers	Fetal Thymus	thymus

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