Variant report

Variant	rs9383020
Chromosome Location	chr6:15095520-15095521
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:14707182..14709168-chr6:15094255..15096245,2	K562	blood:
2	chr6:15093162..15095883-chr6:15107253..15109539,2	MCF-7	breast:
3	chr6:15092995..15095757-chr6:15118674..15121139,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs13191059	0.92[ASN][1000 genomes]
rs13210483	0.93[ASN][1000 genomes]
rs16876061	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35957683	0.80[ASN][1000 genomes]
rs4715965	0.85[ASN][1000 genomes]
rs6906466	0.90[ASN][1000 genomes]
rs6928159	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6928936	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6936729	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72832873	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72832876	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72832881	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72832884	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72832887	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72832890	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72832892	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7756288	0.85[ASN][1000 genomes]
rs7767571	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9349965	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9358050	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9367859	0.89[ASN][1000 genomes]
rs9367860	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9370791	0.88[AMR][1000 genomes]
rs9383022	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9383024	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9383025	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9396553	0.83[AMR][1000 genomes]
rs9396555	0.88[AMR][1000 genomes]
rs9396556	0.88[AMR][1000 genomes]
rs9396557	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9396558	0.83[ASN][1000 genomes]
rs9800553	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15087400-15117600	Weak transcription	Right Atrium	heart
2	chr6:15090400-15109000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:15090800-15096800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:15093200-15095800	Weak transcription	K562	blood
5	chr6:15093400-15097400	Weak transcription	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links