Variant report

Variant	rs9349965
Chromosome Location	chr6:15109775-15109776
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr6:15109664-15109832	K562	blood:	n/a	n/a
2	MAFF	chr6:15109582-15109818	HepG2	liver:	n/a	chr6:15109630-15109644
3	CEBPB	chr6:15109716-15109896	HepG2	liver:	n/a	n/a
4	MYC	chr6:15109624-15109972	NB4	blood:	n/a	n/a
5	POLR2A	chr6:15107538-15110001	SK-N-MC	brain:	n/a	n/a
6	CEBPB	chr6:15109714-15109821	K562	blood:	n/a	n/a
7	MAFK	chr6:15109547-15109865	IMR90	lung:	n/a	chr6:15109629-15109645 chr6:15109627-15109647
8	POLR2A	chr6:15109479-15109927	SK-N-MC	brain:	n/a	n/a
9	MAFK	chr6:15109555-15109863	HepG2	liver:	n/a	chr6:15109629-15109645 chr6:15109627-15109647
10	MAFK	chr6:15109620-15109836	HepG2	liver:	n/a	chr6:15109629-15109645 chr6:15109627-15109647

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15107869..15110295-chr6:15242346..15245809,3	K562	blood:

Variant related genes	Relation type
RN7SL332P	TF binding region
ENSG00000271888	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs13191059	0.90[ASN][1000 genomes]
rs13210483	0.91[ASN][1000 genomes]
rs16876061	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35957683	0.94[ASN][1000 genomes]
rs4715965	0.99[ASN][1000 genomes]
rs6906466	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6928159	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6928936	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6936729	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72832873	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72832876	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72832881	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72832884	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72832887	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72832890	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72832892	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7756288	0.99[ASN][1000 genomes]
rs7767571	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9358050	0.91[CEU][hapmap];0.94[CHB][hapmap];0.91[CHD][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9367859	0.95[ASN][1000 genomes]
rs9367860	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9370791	0.88[AMR][1000 genomes]
rs9383020	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9383022	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9383023	0.88[CHB][hapmap];0.91[CHD][hapmap];0.94[JPT][hapmap];0.80[YRI][hapmap];0.93[ASN][1000 genomes]
rs9383024	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9383025	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9396553	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs9396554	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs9396555	0.88[AMR][1000 genomes]
rs9396556	1.00[CEU][hapmap];0.88[AMR][1000 genomes]
rs9396557	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9396558	0.81[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs9800553	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1016007	chr6:15099585-15159098	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2762580	chr6:15105917-15159110	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9349965	NOL7	cis	cerebellum	SCAN
rs9349965	BBC3	trans	parietal	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15087400-15117600	Weak transcription	Right Atrium	heart
2	chr6:15108400-15110600	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr6:15108600-15110000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr6:15109000-15110000	Enhancers	Fetal Brain Male	brain
5	chr6:15109000-15110400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr6:15109200-15111000	Weak transcription	K562	blood
7	chr6:15109400-15115800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr6:15109400-15116200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr6:15109600-15109800	Enhancers	Monocytes-CD14+_RO01746	blood

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