Variant report

Variant	rs6928159
Chromosome Location	chr6:15108909-15108910
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr6:15108802-15109097	K562	blood:	n/a	chr6:15108962-15108973 chr6:15108963-15108974 chr6:15108962-15108975
2	POLR2A	chr6:15107207-15109243	SK-N-MC	brain:	n/a	n/a
3	CEBPB	chr6:15108895-15109082	A549	lung:	n/a	chr6:15108962-15108973 chr6:15108963-15108974 chr6:15108962-15108975
4	FOXP2	chr6:15108770-15108975	SK-N-MC	brain:	n/a	n/a
5	POLR2A	chr6:15107538-15110001	SK-N-MC	brain:	n/a	n/a
6	CEBPB	chr6:15108799-15109127	HepG2	liver:	n/a	chr6:15108962-15108973 chr6:15108963-15108974 chr6:15108962-15108975
7	RCOR1	chr6:15108757-15108927	K562	blood:	n/a	n/a
8	CEBPB	chr6:15108823-15109087	H1-hESC	embryonic stem cell:	n/a	chr6:15108962-15108973 chr6:15108963-15108974 chr6:15108962-15108975
9	GATA1	chr6:15106470-15108923	K562	blood:	n/a	chr6:15108734-15108745 chr6:15106808-15106825 chr6:15107298-15107307
10	FOXP2	chr6:15108634-15109368	SK-N-MC	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:15107869..15110295-chr6:15242346..15245809,3	K562	blood:
2	chr6:14882855..14884940-chr6:15106180..15108933,2	K562	blood:
3	chr6:14778863..14781243-chr6:15107030..15109161,2	K562	blood:
4	chr6:15106427..15109667-chr6:15111584..15114479,3	K562	blood:
5	chr6:15069954..15071516-chr6:15106946..15109346,2	K562	blood:
6	chr6:15093162..15095883-chr6:15107253..15109539,2	MCF-7	breast:
7	chr6:15105604..15108959-chr6:15245974..15248979,5	K562	blood:

Variant related genes	Relation type
ENSG00000216754	TF binding region
RN7SL332P	TF binding region
ENSG00000235488	Chromatin interaction
ENSG00000242989	Chromatin interaction
ENSG00000008083	Chromatin interaction
ENSG00000271888	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs13191059	0.90[ASN][1000 genomes]
rs13210483	0.91[ASN][1000 genomes]
rs16876061	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35957683	0.94[ASN][1000 genomes]
rs4715965	0.99[ASN][1000 genomes]
rs6906466	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6928936	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6936729	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72832873	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72832876	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72832881	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72832884	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72832887	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72832890	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72832892	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7756288	0.99[ASN][1000 genomes]
rs7767571	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9349965	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9358050	0.91[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9367859	0.95[ASN][1000 genomes]
rs9367860	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9370791	0.88[AMR][1000 genomes]
rs9383020	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9383022	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9383023	0.88[CHB][hapmap];0.94[JPT][hapmap];0.80[YRI][hapmap];0.93[ASN][1000 genomes]
rs9383024	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9383025	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9396553	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs9396554	1.00[CEU][hapmap]
rs9396555	0.88[AMR][1000 genomes]
rs9396556	1.00[CEU][hapmap];0.88[AMR][1000 genomes]
rs9396557	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9396558	0.81[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs9800553	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1016007	chr6:15099585-15159098	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2762580	chr6:15105917-15159110	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15087400-15117600	Weak transcription	Right Atrium	heart
2	chr6:15090400-15109000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:15107400-15109200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:15108000-15109200	Enhancers	K562	blood
5	chr6:15108400-15109200	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr6:15108400-15110600	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr6:15108600-15110000	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr6:15108800-15109400	Enhancers	H1 Cell Line	embryonic stem cell
9	chr6:15108800-15109400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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