Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF217	chr6:15092885-15093115	MCF-7	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:15085986..15094450-chr6:15243173..15249347,32	MCF-7	breast:
2	chr6:15092995..15095757-chr6:15118674..15121139,2	K562	blood:
3	chr6:15092731..15095339-chr6:15106274..15108820,2	K562	blood:

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs13191059	0.94[ASN][1000 genomes]
rs13210483	0.95[ASN][1000 genomes]
rs16876061	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs35957683	0.90[ASN][1000 genomes]
rs4715965	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6928159	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6928936	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6936729	0.92[ASN][1000 genomes]
rs72832873	0.89[ASN][1000 genomes]
rs72832876	0.89[ASN][1000 genomes]
rs72832881	0.97[ASN][1000 genomes]
rs72832884	0.95[ASN][1000 genomes]
rs72832887	0.95[ASN][1000 genomes]
rs72832890	0.94[ASN][1000 genomes]
rs72832892	0.92[ASN][1000 genomes]
rs7756288	0.95[ASN][1000 genomes]
rs7767571	0.94[ASN][1000 genomes]
rs9349965	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9358050	0.93[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs9367859	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9367860	0.95[ASN][1000 genomes]
rs9383020	0.90[ASN][1000 genomes]
rs9383022	0.94[ASN][1000 genomes]
rs9383023	0.93[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs9383024	0.95[ASN][1000 genomes]
rs9383025	0.93[ASN][1000 genomes]
rs9396557	0.95[ASN][1000 genomes]
rs9396558	0.93[ASN][1000 genomes]
rs9800553	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15087400-15117600	Weak transcription	Right Atrium	heart
2	chr6:15090400-15094200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:15090400-15109000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:15090800-15096800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:15091800-15093200	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr6:15091800-15093200	Enhancers	K562	blood
7	chr6:15092600-15093200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:15092600-15093400	Enhancers	Placenta	Placenta
9	chr6:15092800-15093200	Enhancers	Esophagus	oesophagus

Quick Search: