Variant report

Variant	rs9408631
Chromosome Location	chr9:546974-546975
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr9:546830-547304	MCF-7	breast:	n/a	chr9:547092-547113 chr9:547098-547114 chr9:547097-547115
2	CTCF	chr9:546805-547366	MCF-7	breast:	n/a	chr9:547092-547113 chr9:547098-547114 chr9:547097-547115
3	NR3C1	chr9:546774-547157	A549	lung:	n/a	n/a
4	RAD21	chr9:546935-547286	H1-hESC	embryonic stem cell:	n/a	n/a
5	RAD21	chr9:546923-547224	HepG2	liver:	n/a	n/a
6	RAD21	chr9:546829-547352	H1-hESC	embryonic stem cell:	n/a	n/a
7	RAD21	chr9:546909-547293	HCT-116	colon:	n/a	n/a
8	KAP1	chr9:546427-547381	HEK293	kidney:	n/a	n/a
9	CTCF	chr9:546972-547247	Medullo	brain:	n/a	chr9:547092-547113 chr9:547098-547114 chr9:547097-547115
10	BHLHE40	chr9:546835-547287	K562	blood:	n/a	n/a
11	RAD21	chr9:546843-547350	A549	lung:	n/a	n/a
12	SMC3	chr9:546878-547281	Hela-S3	cervix:	n/a	n/a
13	CTCF	chr9:546927-547292	HCT-116	colon:	n/a	chr9:547092-547113 chr9:547098-547114 chr9:547097-547115
14	RAD21	chr9:546917-547277	H1-hESC	embryonic stem cell:	n/a	n/a
15	CTCF	chr9:546974-547257	MCF-7	breast:	n/a	chr9:547092-547113 chr9:547098-547114 chr9:547097-547115
16	CTCF	chr9:546921-547275	A549	lung:	n/a	chr9:547092-547113 chr9:547098-547114 chr9:547097-547115
17	RAD21	chr9:546768-547336	MCF-7	breast:	n/a	n/a
18	CTCF	chr9:546955-547208	IMR90	lung:	n/a	chr9:547092-547113 chr9:547098-547114 chr9:547097-547115
19	CTCF	chr9:546920-547070	BJ	skin:	n/a	n/a
20	RAD21	chr9:546941-547141	A549	lung:	n/a	n/a
21	CTCF	chr9:546940-547232	HepG2	liver:	n/a	chr9:547092-547113 chr9:547098-547114 chr9:547097-547115
22	CTCF	chr9:546926-547284	GM12878	blood:	n/a	chr9:547092-547113 chr9:547098-547114 chr9:547097-547115
23	CTCF	chr9:546860-547130	HAc	cerebellar:	n/a	chr9:547092-547113 chr9:547098-547114 chr9:547097-547115
24	CTCF	chr9:546960-547110	HCT-116	colon:	n/a	n/a
25	RAD21	chr9:546932-547276	Hela-S3	cervix:	n/a	n/a
26	KAP1	chr9:546287-547403	U2OS	brain:	n/a	n/a
27	MAX	chr9:546950-547265	H1-hESC	embryonic stem cell:	n/a	n/a
28	RAD21	chr9:546904-547313	A549	lung:	n/a	n/a
29	RAD21	chr9:546886-547346	HCT-116	colon:	n/a	n/a
30	CTCF	chr9:546940-547090	AG04450	lung:	n/a	n/a
31	CTCF	chr9:546905-547256	H1-hESC	embryonic stem cell:	n/a	chr9:547092-547113 chr9:547098-547114 chr9:547097-547115
32	RAD21	chr9:546907-547369	MCF-7	breast:	n/a	n/a
33	RAD21	chr9:546831-547304	HepG2	liver:	n/a	n/a
34	CTCF	chr9:546931-547265	K562	blood:	n/a	chr9:547092-547113 chr9:547098-547114 chr9:547097-547115
35	RAD21	chr9:546841-547330	ECC-1	luminal epithelium:	n/a	n/a
36	CTCF	chr9:546860-547010	NHLF	lung:	n/a	n/a
37	SMC3	chr9:546908-547289	HepG2	liver:	n/a	n/a
38	CTCF	chr9:546940-547090	A549	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:385596..386468-chr9:546637..547164,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000226403	TF binding region

Extended variants
information (count: 121 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10975049	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12352274	0.82[EUR][1000 genomes]
rs2255187	1.00[CEU][hapmap];0.89[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2641978	0.87[EUR][1000 genomes]
rs2641985	0.82[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2641986	1.00[CEU][hapmap];0.88[YRI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2641987	1.00[CEU][hapmap];0.89[YRI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2641989	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs2641990	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2641991	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2804267	0.82[CEU][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2804268	0.82[CEU][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2804312	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2804313	1.00[CEU][hapmap]
rs56094237	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7048280	0.82[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72689604	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72689615	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72689619	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72689624	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72705671	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72705681	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72707750	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7853150	0.80[EUR][1000 genomes]
rs881987	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9407294	0.86[EUR][1000 genomes]
rs9407295	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9407296	0.84[EUR][1000 genomes]
rs9408613	0.86[EUR][1000 genomes]
rs9408616	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9408618	0.89[YRI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9408619	0.82[CEU][hapmap];0.89[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9408621	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9408624	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9408626	0.82[CEU][hapmap];0.89[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9408627	0.82[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9408628	0.82[CEU][hapmap];0.89[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9408646	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:83 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949346	chr9:13091-776349	Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv2764172	chr9:40910-593899	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv949051	chr9:40910-925305	Bivalent Enhancer Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv492004	chr9:204090-639077	Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv1015338	chr9:209254-808057	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
6	nsv1034557	chr9:209254-964422	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	nsv539828	chr9:209254-964422	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
8	nsv1016963	chr9:214166-789985	Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
9	nsv539843	chr9:214166-789985	Genic enhancers Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
10	nsv1031297	chr9:214366-659340	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
11	nsv539860	chr9:214366-659340	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
12	nsv539861	chr9:214366-805666	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
13	nsv1035041	chr9:222282-654518	Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
14	nsv539877	chr9:222282-654518	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
15	nsv1018491	chr9:222282-715668	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
16	nsv539878	chr9:222282-715668	Enhancers Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
17	nsv466044	chr9:238389-634160	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
18	nsv533086	chr9:280255-753314	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
19	nsv429976	chr9:302324-678088	Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
20	nsv1016589	chr9:304385-730233	Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
21	nsv539886	chr9:304385-730233	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
22	nsv533964	chr9:314969-910448	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
23	nsv1028102	chr9:327139-605908	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
24	nsv1031809	chr9:327139-715668	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
25	nsv613011	chr9:333819-635677	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
26	nsv931598	chr9:349034-862771	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
27	nsv1027367	chr9:366387-697983	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
28	nsv1027550	chr9:366387-715668	Active TSS Flanking Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
29	nsv1026435	chr9:373505-561031	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
30	nsv539891	chr9:373505-561031	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
31	nsv530918	chr9:381430-839211	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
32	esv2752307	chr9:382810-733212	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
33	nsv1017252	chr9:386252-579791	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
34	nsv891974	chr9:395025-685819	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
35	esv2829905	chr9:395025-712156	Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
36	nsv1021206	chr9:399146-911325	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
37	nsv613014	chr9:417918-621779	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
38	nsv891977	chr9:419399-684160	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
39	nsv1022323	chr9:422192-561031	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
40	nsv1027448	chr9:448941-605908	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
41	nsv1029985	chr9:459016-813600	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
42	nsv539895	chr9:459016-813600	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
43	nsv916532	chr9:459131-862833	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
44	nsv1025338	chr9:471885-570097	Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
45	nsv539896	chr9:471885-570097	Strong transcription Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
46	nsv530928	chr9:472086-602792	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
47	nsv1025492	chr9:478813-1157169	Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
48	nsv539897	chr9:478813-1157169	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
49	nsv891980	chr9:484850-686301	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
50	nsv1026988	chr9:495809-827580	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:535400-549200	Weak transcription	Lung	lung
2	chr9:538400-547600	Weak transcription	Psoas Muscle	Psoas
3	chr9:540600-549200	Weak transcription	Fetal Intestine Large	intestine
4	chr9:544400-548400	Enhancers	Brain Angular Gyrus	brain
5	chr9:544600-547200	Enhancers	Left Ventricle	heart
6	chr9:544600-547600	Enhancers	Aorta	Aorta
7	chr9:545000-547800	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr9:545200-547600	Enhancers	Adipose Nuclei	Adipose
9	chr9:545400-547000	Enhancers	Ovary	ovary
10	chr9:545400-547200	Enhancers	Colon Smooth Muscle	Colon
11	chr9:545400-547600	Enhancers	Rectal Smooth Muscle	rectum
12	chr9:545600-547200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr9:545600-547200	Enhancers	NHEK	skin
14	chr9:545800-547000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr9:546000-547200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr9:546000-547400	Enhancers	HMEC	breast
17	chr9:546200-547000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr9:546200-547800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr9:546200-548400	Flanking Active TSS	Fetal Heart	heart
20	chr9:546400-547000	Enhancers	Gastric	stomach
21	chr9:546400-547200	Enhancers	Colonic Mucosa	Colon
22	chr9:546400-547200	Enhancers	Placenta	Placenta
23	chr9:546400-547200	Enhancers	Rectal Mucosa Donor 31	rectum
24	chr9:546400-547200	Enhancers	Small Intestine	intestine
25	chr9:546400-547200	Enhancers	Stomach Mucosa	stomach
26	chr9:546400-547400	Enhancers	H1 Cell Line	embryonic stem cell
27	chr9:546400-547400	Enhancers	Pancreas	Pancrea
28	chr9:546400-547800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr9:546400-547800	Enhancers	Fetal Stomach	stomach
30	chr9:546400-548000	Flanking Active TSS	Brain Hippocampus Middle	brain
31	chr9:546400-548000	Enhancers	A549	lung
32	chr9:546600-547000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr9:546600-547000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
34	chr9:546600-547000	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
35	chr9:546600-547200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr9:546600-547200	Enhancers	iPS-15b Cell Line	embryonic stem cell
37	chr9:546600-547200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr9:546600-547200	Bivalent Enhancer	Liver	Liver
39	chr9:546600-547400	Enhancers	HUES48 Cell Line	embryonic stem cell
40	chr9:546600-547400	Enhancers	iPS-20b Cell Line	embryonic stem cell
41	chr9:546600-547400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
42	chr9:546600-547400	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr9:546600-547400	Bivalent Enhancer	Brain Germinal Matrix	brain
44	chr9:546600-547600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr9:546600-547600	Enhancers	iPS-18 Cell Line	embryonic stem cell
46	chr9:546600-549200	Weak transcription	Right Ventricle	heart
47	chr9:546600-549600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr9:546600-557000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr9:546600-569400	Weak transcription	Esophagus	oesophagus
50	chr9:546800-547000	Flanking Active TSS	Brain Cingulate Gyrus	brain

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