Variant report

Variant	rs9447534
Chromosome Location	chr6:76392342-76392343
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12213227	0.82[EUR][1000 genomes]
rs13214795	0.92[ASN][1000 genomes]
rs2647399	0.99[ASN][1000 genomes]
rs2647401	0.94[ASN][1000 genomes]
rs2647402	0.94[ASN][1000 genomes]
rs2647403	0.94[ASN][1000 genomes]
rs2647409	0.96[ASN][1000 genomes]
rs2647412	0.92[ASN][1000 genomes]
rs2647413	0.94[ASN][1000 genomes]
rs2647418	0.99[ASN][1000 genomes]
rs2647419	0.99[ASN][1000 genomes]
rs2748953	0.92[ASN][1000 genomes]
rs2748965	0.91[ASN][1000 genomes]
rs2756039	0.90[ASN][1000 genomes]
rs2783351	0.96[ASN][1000 genomes]
rs2784730	0.94[ASN][1000 genomes]
rs2784732	0.94[ASN][1000 genomes]
rs2784733	0.94[ASN][1000 genomes]
rs2842535	0.99[ASN][1000 genomes]
rs2842539	0.94[ASN][1000 genomes]
rs2842557	0.81[EUR][1000 genomes]
rs2842562	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2842563	0.90[ASN][1000 genomes]
rs2842571	0.94[ASN][1000 genomes]
rs2842572	0.94[ASN][1000 genomes]
rs34239015	0.81[ASN][1000 genomes]
rs9447524	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027915	chr6:75893542-76510113	Active TSS Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv538311	chr6:75893542-76510113	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
3	nsv1022428	chr6:76023118-76575620	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases
4	nsv538312	chr6:76023118-76575620	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases
5	nsv1032245	chr6:76045537-76545703	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases
6	nsv538313	chr6:76045537-76545703	Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases
7	nsv1019328	chr6:76154751-76604197	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
8	nsv538314	chr6:76154751-76604197	Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
9	nsv1023331	chr6:76238459-76482117	Strong transcription ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
10	nsv538315	chr6:76238459-76482117	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
11	nsv1017542	chr6:76238459-76537447	Strong transcription Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
12	nsv1031745	chr6:76257913-76493355	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
13	nsv538316	chr6:76257913-76493355	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
14	nsv533100	chr6:76257914-76493354	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
15	nsv1023749	chr6:76287578-76482117	Weak transcription Flanking Active TSS Genic enhancers Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
16	nsv538317	chr6:76287578-76482117	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
17	nsv1021090	chr6:76306100-76759397	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
18	nsv538318	chr6:76306100-76759397	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
19	nsv886183	chr6:76320846-76399539	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
20	nsv886184	chr6:76320846-76462711	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
21	nsv886185	chr6:76320846-76498109	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
22	nsv886186	chr6:76328955-76469115	Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
23	nsv1032961	chr6:76343575-76788852	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
24	nsv932201	chr6:76365548-77219650	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
25	nsv522814	chr6:76375321-76405700	ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
26	esv3335869	chr6:76389281-76411862	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
27	esv3332890	chr6:76390281-76414581	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:76339400-76402000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:76364800-76392400	Strong transcription	HUES6 Cell Line	embryonic stem cell
3	chr6:76366400-76392400	Strong transcription	Primary T helper cells fromperipheralblood	blood
4	chr6:76366600-76392400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:76376000-76393000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:76380000-76393000	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr6:76382000-76422800	Weak transcription	Stomach Mucosa	stomach
8	chr6:76383000-76392400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:76383000-76392400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr6:76383000-76393000	Strong transcription	Primary T cells fromperipheralblood	blood
11	chr6:76383000-76393000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:76383200-76393000	Strong transcription	Primary neutrophils fromperipheralblood	blood
13	chr6:76383400-76392400	Strong transcription	Primary hematopoietic stem cells	blood
14	chr6:76383400-76392400	Strong transcription	Adipose Nuclei	Adipose
15	chr6:76383400-76393200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr6:76383600-76392400	Strong transcription	Liver	Liver
17	chr6:76383800-76392400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
18	chr6:76383800-76397000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr6:76384200-76392400	Strong transcription	Muscle Satellite Cultured Cells	--
20	chr6:76384600-76393000	Strong transcription	Rectal Mucosa Donor 29	rectum
21	chr6:76385200-76392400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr6:76385400-76392800	Strong transcription	Fetal Thymus	thymus
23	chr6:76385400-76393000	Strong transcription	H1 Cell Line	embryonic stem cell
24	chr6:76385600-76392400	Strong transcription	Brain Cingulate Gyrus	brain
25	chr6:76386000-76393000	Strong transcription	Skeletal Muscle Female	skeletal muscle
26	chr6:76386200-76392400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr6:76386200-76392400	Strong transcription	Brain Anterior Caudate	brain
28	chr6:76386200-76392400	Strong transcription	Fetal Kidney	kidney
29	chr6:76386200-76393000	Strong transcription	Psoas Muscle	Psoas
30	chr6:76387000-76392400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr6:76387200-76392400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr6:76387200-76392400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr6:76387200-76392400	Strong transcription	Cortex derived primary cultured neurospheres	brain
34	chr6:76387200-76392400	Strong transcription	Ovary	ovary
35	chr6:76387200-76393000	Strong transcription	Sigmoid Colon	Sigmoid Colon
36	chr6:76387200-76393000	Strong transcription	Skeletal Muscle Male	skeletal muscle
37	chr6:76387600-76392400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr6:76387600-76392400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr6:76388000-76393600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr6:76388600-76392400	Strong transcription	Rectal Smooth Muscle	rectum
41	chr6:76389400-76398600	Weak transcription	HSMMtube	muscle
42	chr6:76390000-76405600	Weak transcription	HMEC	breast
43	chr6:76390400-76392400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr6:76390600-76393200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr6:76390800-76392400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
46	chr6:76391000-76392400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr6:76391000-76393200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr6:76391000-76406800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
49	chr6:76391200-76392400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
50	chr6:76391200-76392400	ZNF genes & repeats	Fetal Muscle Trunk	muscle

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