Variant report

Variant	rs9455390
Chromosome Location	chr6:71958439-71958440
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10046271	0.88[AFR][1000 genomes]
rs10080462	0.86[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs10755549	0.86[ASN][1000 genomes]
rs10755550	1.00[ASN][1000 genomes]
rs12198257	0.91[ASN][1000 genomes]
rs12206837	0.91[ASN][1000 genomes]
rs4513748	0.84[ASN][1000 genomes]
rs4583944	0.86[ASN][1000 genomes]
rs6917156	0.93[ASN][1000 genomes]
rs6917168	0.93[ASN][1000 genomes]
rs73503191	0.89[AFR][1000 genomes]
rs7758727	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9294889	0.95[ASN][1000 genomes]
rs9294891	0.96[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs9342825	0.90[ASN][1000 genomes]
rs9446358	0.93[ASN][1000 genomes]
rs9446360	0.97[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs9455384	0.88[ASN][1000 genomes]
rs9455385	0.95[ASN][1000 genomes]
rs9455391	0.90[ASN][1000 genomes]
rs9455392	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9455393	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9455394	0.93[ASN][1000 genomes]
rs9455395	0.97[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs9455396	0.97[ASN][1000 genomes]
rs9455397	0.87[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs9455398	0.87[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs9455400	0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763953	chr6:71954956-71968035	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71954600-71961000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:71955400-71959600	Weak transcription	Right Atrium	heart
3	chr6:71955600-71972600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:71956400-71960200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:71957200-71960000	Enhancers	HUVEC	blood vessel
6	chr6:71957400-71959000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:71957400-71962400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr6:71957600-71959600	Enhancers	Primary B cells from cord blood	blood
9	chr6:71957600-71959600	Enhancers	Muscle Satellite Cultured Cells	--
10	chr6:71957800-71958600	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr6:71957800-71959000	Enhancers	Fetal Kidney	kidney
12	chr6:71957800-71959800	Enhancers	Osteobl	bone
13	chr6:71957800-71961200	Enhancers	NHDF-Ad	bronchial
14	chr6:71957800-71965000	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr6:71958000-71958600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
16	chr6:71958000-71958600	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr6:71958000-71958800	Enhancers	H1 Cell Line	embryonic stem cell
18	chr6:71958000-71958800	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr6:71958000-71959400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr6:71958000-71959600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:71958000-71960000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr6:71958000-71960200	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr6:71958000-71960200	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr6:71958000-71960200	Enhancers	Primary B cells from peripheral blood	blood
25	chr6:71958000-71960400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr6:71958000-71960400	Enhancers	NHEK	skin
27	chr6:71958000-71960800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr6:71958000-71960800	Enhancers	HMEC	breast
29	chr6:71958000-71960800	Enhancers	NH-A	brain
30	chr6:71958000-71961000	Enhancers	Hela-S3	cervix
31	chr6:71958000-71961000	Enhancers	HSMM	muscle
32	chr6:71958000-71961400	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr6:71958000-71961400	Enhancers	Placenta	Placenta
34	chr6:71958000-71965000	Enhancers	Primary hematopoietic stem cells short term culture	blood
35	chr6:71958200-71958600	Enhancers	iPS-18 Cell Line	embryonic stem cell
36	chr6:71958200-71958600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
37	chr6:71958200-71958600	Enhancers	Fetal Muscle Trunk	muscle
38	chr6:71958200-71958600	Flanking Active TSS	A549	lung
39	chr6:71958200-71958800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr6:71958200-71959200	Enhancers	Spleen	Spleen
41	chr6:71958200-71959400	Enhancers	Fetal Muscle Leg	muscle
42	chr6:71958200-71959600	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr6:71958200-71959800	Enhancers	Skeletal Muscle Male	skeletal muscle
44	chr6:71958200-71961000	Enhancers	Adipose Nuclei	Adipose
45	chr6:71958200-71961200	Enhancers	NHLF	lung
46	chr6:71958200-71963000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
47	chr6:71958400-71958600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr6:71958400-71958600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr6:71958400-71958600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
50	chr6:71958400-71958600	Enhancers	Brain Hippocampus Middle	brain

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