Variant report

Variant	rs9455396
Chromosome Location	chr6:71966740-71966741
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:71953923..71956833-chr6:71966030..71968468,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10080462	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10755549	0.83[ASN][1000 genomes]
rs10755550	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12198257	0.88[ASN][1000 genomes]
rs12206837	0.88[ASN][1000 genomes]
rs4513748	0.81[ASN][1000 genomes]
rs4583944	0.83[ASN][1000 genomes]
rs6917156	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6917168	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7758727	0.97[ASN][1000 genomes]
rs9294889	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9294891	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9342825	0.87[ASN][1000 genomes]
rs9446358	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9446360	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9446361	0.98[EUR][1000 genomes]
rs9455384	0.85[ASN][1000 genomes]
rs9455385	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9455390	0.97[ASN][1000 genomes]
rs9455391	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9455392	0.95[ASN][1000 genomes]
rs9455393	0.97[ASN][1000 genomes]
rs9455394	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9455395	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9455397	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9455398	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9455400	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763953	chr6:71954956-71968035	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71955600-71972600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:71959800-71967800	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr6:71963800-71967600	Weak transcription	Aorta	Aorta
4	chr6:71963800-71968400	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr6:71964000-71967200	Weak transcription	Brain Substantia Nigra	brain
6	chr6:71964000-71968200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr6:71964400-71966800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr6:71964400-71966800	Weak transcription	Brain Anterior Caudate	brain
9	chr6:71964400-71966800	Weak transcription	Right Ventricle	heart
10	chr6:71964400-71967000	Weak transcription	Adipose Nuclei	Adipose
11	chr6:71964400-71967600	Weak transcription	Brain Angular Gyrus	brain
12	chr6:71964400-71967600	Weak transcription	Brain Cingulate Gyrus	brain
13	chr6:71964400-71967600	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr6:71964400-71967600	Weak transcription	NHDF-Ad	bronchial
15	chr6:71964400-71967800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:71964400-71967800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr6:71964400-71967800	Weak transcription	Placenta	Placenta
18	chr6:71964600-71967800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr6:71964800-71967600	Weak transcription	Brain Hippocampus Middle	brain
20	chr6:71965000-71966800	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr6:71965200-71968000	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr6:71966600-71968800	Enhancers	Primary monocytes fromperipheralblood	blood

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