Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10080462	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10755549	0.90[ASN][1000 genomes]
rs10755550	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12198257	0.95[ASN][1000 genomes]
rs12206837	0.95[ASN][1000 genomes]
rs4513748	0.88[ASN][1000 genomes]
rs4583944	0.90[ASN][1000 genomes]
rs6917156	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6917168	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7758727	0.95[ASN][1000 genomes]
rs9294891	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9342825	0.86[ASN][1000 genomes]
rs9446358	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9446360	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9446361	0.93[EUR][1000 genomes]
rs9455384	0.93[ASN][1000 genomes]
rs9455385	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9455390	0.95[ASN][1000 genomes]
rs9455391	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9455392	0.94[ASN][1000 genomes]
rs9455393	0.95[ASN][1000 genomes]
rs9455394	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9455395	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9455396	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9455397	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9455398	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9455400	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526921	chr6:71890237-71950242	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv5341	chr6:71925073-71956936	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71946800-71949400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:71946800-71949400	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr6:71947000-71949600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr6:71947000-71949600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr6:71947000-71955000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:71947800-71949800	Enhancers	NHLF	lung
7	chr6:71947800-71950200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:71948200-71949800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:71948400-71949400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:71948400-71949600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:71948400-71949600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:71948400-71949600	Weak transcription	Osteobl	bone
13	chr6:71948800-71949200	Weak transcription	NHDF-Ad	bronchial
14	chr6:71948800-71949800	Enhancers	Breast Myoepithelial Primary Cells	Breast

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