Variant report

Variant	rs9455398
Chromosome Location	chr6:71967825-71967826
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:71953923..71956833-chr6:71966030..71968468,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10046271	0.80[AFR][1000 genomes]
rs10080462	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10755549	0.81[ASN][1000 genomes]
rs10755550	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12198257	0.86[ASN][1000 genomes]
rs12206837	0.86[ASN][1000 genomes]
rs4583944	0.81[ASN][1000 genomes]
rs6917156	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6917168	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73503191	0.80[AFR][1000 genomes]
rs7758727	0.89[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs9294889	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9294891	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9342825	0.86[ASN][1000 genomes]
rs9446358	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9446360	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9446361	0.98[EUR][1000 genomes]
rs9455384	0.84[ASN][1000 genomes]
rs9455385	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9455390	0.87[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs9455391	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9455392	0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9455393	0.89[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs9455394	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9455395	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9455396	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9455397	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9455400	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763953	chr6:71954956-71968035	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71955600-71972600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:71963800-71968400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr6:71964000-71968200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr6:71965200-71968000	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr6:71966600-71968800	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr6:71966800-71968200	Enhancers	Brain Anterior Caudate	brain
7	chr6:71966800-71968800	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr6:71967000-71968400	Enhancers	Adipose Nuclei	Adipose
9	chr6:71967200-71968600	Enhancers	Brain Substantia Nigra	brain
10	chr6:71967600-71968000	Enhancers	Aorta	Aorta
11	chr6:71967600-71968400	Enhancers	Brain Angular Gyrus	brain
12	chr6:71967600-71968600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:71967600-71968600	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr6:71967600-71968600	Enhancers	NHDF-Ad	bronchial
15	chr6:71967600-71968800	Enhancers	Brain Cingulate Gyrus	brain
16	chr6:71967600-71968800	Enhancers	Brain Hippocampus Middle	brain
17	chr6:71967800-71968000	Enhancers	Placenta	Placenta
18	chr6:71967800-71968200	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr6:71967800-71968200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr6:71967800-71968200	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr6:71967800-71968400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr6:71967800-71968400	Enhancers	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links