Variant report

Variant	rs9484798
Chromosome Location	chr6:100644591-100644592
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs2073264	0.85[EUR][1000 genomes]
rs4140483	0.82[EUR][1000 genomes]
rs56161817	0.84[EUR][1000 genomes]
rs58379285	0.82[EUR][1000 genomes]
rs61068331	0.84[EUR][1000 genomes]
rs66584467	0.81[EUR][1000 genomes]
rs67008407	0.81[EUR][1000 genomes]
rs67396427	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6920120	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72946044	0.85[EUR][1000 genomes]
rs761708	0.81[EUR][1000 genomes]
rs761709	0.81[EUR][1000 genomes]
rs9484823	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9496736	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9496859	0.85[EUR][1000 genomes]
rs9496865	0.84[EUR][1000 genomes]
rs9496882	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752086	chr6:100257279-100675050	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1023038	chr6:100277840-100650498	Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv604260	chr6:100480795-100664839	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:100643000-100651400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:100643400-100644800	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr6:100644000-100644800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
4	chr6:100644000-100644800	Active TSS	H9 Cell Line	embryonic stem cell
5	chr6:100644000-100644800	Active TSS	HUES48 Cell Line	embryonic stem cell
6	chr6:100644000-100644800	Active TSS	HUES6 Cell Line	embryonic stem cell
7	chr6:100644000-100644800	Active TSS	HUES64 Cell Line	embryonic stem cell
8	chr6:100644000-100644800	Active TSS	iPS-15b Cell Line	embryonic stem cell
9	chr6:100644000-100644800	Active TSS	iPS-18 Cell Line	embryonic stem cell
10	chr6:100644200-100644600	Flanking Active TSS	H1 Cell Line	embryonic stem cell
11	chr6:100644400-100644800	Active TSS	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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