Variant report

Variant	rs67396427
Chromosome Location	chr6:100667752-100667753
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:100667522..100670093-chr6:100673930..100678606,4	K562	blood:
2	chr6:100663880..100666479-chr6:100667174..100669855,2	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs12333216	0.81[ASN][1000 genomes]
rs2073264	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3934920	0.81[ASN][1000 genomes]
rs4131342	0.81[ASN][1000 genomes]
rs4131343	0.81[ASN][1000 genomes]
rs4140483	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4840120	0.86[AFR][1000 genomes]
rs4840123	0.81[ASN][1000 genomes]
rs4840124	0.80[ASN][1000 genomes]
rs55767814	0.80[ASN][1000 genomes]
rs56161817	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57860838	0.87[ASN][1000 genomes]
rs58379285	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59163052	0.80[ASN][1000 genomes]
rs60804634	0.80[ASN][1000 genomes]
rs61068331	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs66584467	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs66847347	0.80[ASN][1000 genomes]
rs67008407	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67084053	0.80[ASN][1000 genomes]
rs67330180	0.81[ASN][1000 genomes]
rs67533394	0.80[ASN][1000 genomes]
rs67868935	0.80[ASN][1000 genomes]
rs6915041	0.80[ASN][1000 genomes]
rs6920120	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72946044	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72948044	0.80[ASN][1000 genomes]
rs72948046	0.81[ASN][1000 genomes]
rs761708	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs761709	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9321981	0.80[ASN][1000 genomes]
rs9321985	0.81[ASN][1000 genomes]
rs9484798	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9484823	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9496736	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9496859	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9496865	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9496882	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9496960	0.81[ASN][1000 genomes]
rs9496988	0.80[ASN][1000 genomes]
rs9497034	0.81[ASN][1000 genomes]
rs9497036	0.81[ASN][1000 genomes]
rs9497037	0.81[ASN][1000 genomes]
rs9497041	0.80[ASN][1000 genomes]
rs961918	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752086	chr6:100257279-100675050	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv604262	chr6:100661336-100701917	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:100664600-100668400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:100666400-100668000	Weak transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links