Variant report

Variant	rs12333216
Chromosome Location	chr6:100715298-100715299
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:100710309..100712220-chr6:100713545..100715403,2	MCF-7	breast:
2	chr6:100710251..100712069-chr6:100713993..100715616,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10499029	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1506087	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1506088	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2073264	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2841307	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2939370	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3934920	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4131342	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4131343	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4140483	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4840123	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4840124	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55767814	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55954654	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56161817	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57860838	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58379285	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59163052	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60804634	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61068331	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs66584467	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs66847347	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67008407	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67084053	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67330180	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67396427	0.81[ASN][1000 genomes]
rs67533394	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67868935	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6915041	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6920120	0.83[ASN][1000 genomes]
rs6933195	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72946044	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72948044	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72948046	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs761708	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs761709	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9321981	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9321985	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9484823	0.80[ASN][1000 genomes]
rs9484892	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9496859	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9496865	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9496882	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9496960	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496988	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9497034	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9497036	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9497037	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9497041	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9497049	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9497096	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:100703800-100715600	Weak transcription	HSMM	muscle
2	chr6:100704200-100715600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:100706400-100716200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr6:100707600-100718600	Weak transcription	K562	blood
5	chr6:100711600-100715400	Weak transcription	HUVEC	blood vessel
6	chr6:100713200-100716600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:100713400-100715800	Weak transcription	NHLF	lung
8	chr6:100714200-100715400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr6:100714200-100718400	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr6:100714200-100718800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:100714400-100718400	Enhancers	NHDF-Ad	bronchial
12	chr6:100714600-100715600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:100714600-100716600	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr6:100714600-100717200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:100714600-100717600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:100714800-100716400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr6:100715000-100718800	Enhancers	Osteobl	bone
18	chr6:100715200-100717000	Weak transcription	HSMMtube	muscle
19	chr6:100715200-100718200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr6:100715200-100719200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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