Variant report

Variant	rs4840124
Chromosome Location	chr6:100729007-100729008
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:100727871..100730715-chr6:100731405..100734347,3	K562	blood:
2	chr6:100726523..100729993-chr6:100731372..100735998,4	K562	blood:
3	chr6:100709488..100712395-chr6:100726490..100729224,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10499029	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12333216	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1506087	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1506088	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2073264	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2841307	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2939370	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3934920	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4131342	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4131343	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4140483	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4840123	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55767814	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55954654	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56161817	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57860838	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58379285	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59163052	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60804634	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61068331	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs66584467	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs66847347	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67008407	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67084053	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67330180	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67396427	0.80[ASN][1000 genomes]
rs67533394	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67868935	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6915041	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6920120	0.81[ASN][1000 genomes]
rs6933195	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72946044	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72948044	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72948046	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs761708	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs761709	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9321981	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9321985	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9484892	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9496859	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9496865	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9496882	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9496960	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9496988	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9497034	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9497036	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9497037	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9497041	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9497049	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9497096	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:100718800-100729200	Weak transcription	NHLF	lung
2	chr6:100722000-100731200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:100723000-100729400	Weak transcription	NHEK	skin
4	chr6:100723600-100729400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:100725200-100729400	Weak transcription	NH-A	brain
6	chr6:100725600-100729200	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr6:100725600-100729400	Weak transcription	HUVEC	blood vessel
8	chr6:100728000-100729200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr6:100728800-100729400	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr6:100728800-100729400	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr6:100728800-100730000	Active TSS	Pancreatic Islets	Pancreatic Islet
12	chr6:100729000-100729200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:100729000-100729200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:100729000-100729200	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr6:100729000-100729200	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr6:100729000-100729200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr6:100729000-100729200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:100729000-100729200	Enhancers	Brain Anterior Caudate	brain
19	chr6:100729000-100729200	Enhancers	Brain Germinal Matrix	brain
20	chr6:100729000-100729200	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr6:100729000-100729200	Enhancers	Brain Substantia Nigra	brain
22	chr6:100729000-100729200	Enhancers	HSMM	muscle
23	chr6:100729000-100729200	Enhancers	K562	blood
24	chr6:100729000-100729200	Active TSS	NHDF-Ad	bronchial
25	chr6:100729000-100729400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
26	chr6:100729000-100729400	Enhancers	Muscle Satellite Cultured Cells	--
27	chr6:100729000-100729400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr6:100729000-100729400	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr6:100729000-100729600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr6:100729000-100730200	Active TSS	ES-I3 Cell Line	embryonic stem cell
31	chr6:100729000-100730200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell

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