Variant report

Variant	rs4140483
Chromosome Location	chr6:100693008-100693009
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:100690867..100695024-chr6:100698971..100702832,3	MCF-7	breast:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10499029	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12333216	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1506087	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1506088	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2073264	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2841307	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2939370	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3934920	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4131342	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4131343	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4840123	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4840124	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55767814	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55954654	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56161817	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57860838	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58379285	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59163052	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60804634	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61068331	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66584467	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66847347	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67008407	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67084053	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67330180	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67396427	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67533394	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67868935	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6915041	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6920120	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6933195	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72946044	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72948044	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72948046	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs761708	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs761709	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9321981	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9321985	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9484798	0.82[EUR][1000 genomes]
rs9484823	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9484892	0.83[ASN][1000 genomes]
rs9496736	0.82[AMR][1000 genomes]
rs9496859	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9496865	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9496882	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9496960	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9496988	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9497034	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9497036	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9497037	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9497041	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9497049	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9497096	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604262	chr6:100661336-100701917	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:100685400-100695200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:100691400-100694000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr6:100692400-100694000	Enhancers	Fetal Intestine Large	intestine
4	chr6:100692800-100693800	Enhancers	K562	blood

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