Variant report

Variant	rs9484892
Chromosome Location	chr6:100737354-100737355
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:100657415..100659145-chr6:100737234..100738905,2	MCF-7	breast:
2	chr6:100737311..100740574-chr6:100740600..100744318,3	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10499029	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12333216	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2939370	0.81[ASN][1000 genomes]
rs3934920	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4131342	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4131343	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4140483	0.83[ASN][1000 genomes]
rs4840123	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4840124	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55767814	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55954654	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57860838	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58379285	0.80[ASN][1000 genomes]
rs59163052	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60804634	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs66847347	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67008407	0.83[ASN][1000 genomes]
rs67084053	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67330180	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67533394	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67868935	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6915041	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6933195	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72948044	0.88[ASN][1000 genomes]
rs72948046	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs761709	0.81[ASN][1000 genomes]
rs9321981	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9321985	0.85[AFR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9496859	0.81[ASN][1000 genomes]
rs9496882	0.81[ASN][1000 genomes]
rs9496960	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9496988	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9497034	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9497036	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9497037	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9497041	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9497049	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030316	chr6:100733205-100759678	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:100730400-100741600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:100731600-100744200	Weak transcription	NHDF-Ad	bronchial
3	chr6:100732000-100744200	Weak transcription	NHLF	lung
4	chr6:100736600-100737400	Enhancers	HUVEC	blood vessel
5	chr6:100736800-100737600	Enhancers	A549	lung
6	chr6:100737000-100737400	Weak transcription	Muscle Satellite Cultured Cells	--

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