Variant report

Variant	rs72948044
Chromosome Location	chr6:100707064-100707065
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:100675649..100678406-chr6:100706884..100708922,2	K562	blood:
2	chr6:100675649..100678323-chr6:100706693..100708384,2	K562	blood:
3	chr6:100704664..100707778-chr6:100709218..100711307,3	K562	blood:
4	chr6:100705901..100707480-chr6:100836775..100838969,2	K562	blood:
5	chr6:100704664..100707392-chr6:100709218..100711307,2	K562	blood:
6	chr6:100676458..100678188-chr6:100705698..100707425,2	MCF-7	breast:
7	chr6:100678985..100681308-chr6:100704669..100708291,4	K562	blood:
8	chr6:100679808..100682581-chr6:100705982..100708291,2	K562	blood:

No data

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10499029	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12333216	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1506087	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1506088	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2073264	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2841307	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2939370	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3934920	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4131342	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4131343	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4140483	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4840123	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4840124	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55767814	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55954654	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56161817	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57860838	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58379285	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59163052	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60804634	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61068331	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs66584467	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs66847347	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67008407	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67084053	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67330180	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67396427	0.80[ASN][1000 genomes]
rs67533394	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67868935	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6915041	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6920120	0.81[ASN][1000 genomes]
rs6933195	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72946044	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72948046	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs761708	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs761709	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9321981	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9321985	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9484892	0.88[ASN][1000 genomes]
rs9496859	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9496865	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9496882	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9496960	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9496988	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9497034	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9497036	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9497037	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9497041	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9497049	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9497096	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv17003	chr6:100706818-100707478	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:100702400-100708800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:100703800-100715600	Weak transcription	HSMM	muscle
3	chr6:100704200-100715600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:100706400-100707200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:100706400-100707600	Enhancers	Dnd41	blood
6	chr6:100706400-100707600	Enhancers	K562	blood
7	chr6:100706400-100708400	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr6:100706400-100708800	Weak transcription	A549	lung
9	chr6:100706400-100709000	Weak transcription	HUVEC	blood vessel
10	chr6:100706400-100714400	Weak transcription	Osteobl	bone
11	chr6:100706400-100716200	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr6:100706600-100707600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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